RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 CTDNEP1O95476 244 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 IGLV1-40P01703 118 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 MMEP08473 750 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 CXCL8P10145 99 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 MYCLP1P12525 358 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 KRT13P13646 458 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 FDPSP14324 419 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ARSAP15289 507 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 GNA15P30679 374 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 IFNAR2P48551 515 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ATXN3P54252 364 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 LILRA4P59901 499 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 SIM1P81133 766 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 LRRC74AQ0VAA2 488 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ZBTB17Q13105 803 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 BYSLQ13895 437 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 HNRNPDQ14103 355 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 PDIA5Q14554 519 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ZNF268Q14587 947 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 PSMD6Q15008 389 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ZBTB6Q15916 424 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 SLC39A12Q504Y0 691 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 SEZ6Q53EL9 994 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 TRIM61Q5EBN2 209 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 AP1ARQ63HQ0 302 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 KIAA1211LQ6NV74 962 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 FDX2Q6P4F2 183 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 USP51Q70EK9 711 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 LPCAT2Q7L5N7 544 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 MON1AQ86VX9 555 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 CD302Q8IX05 232 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 GALNT12Q8IXK2 581 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 CEP57L1Q8IYX8 460 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 HDDC3Q8N4P3 179 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 TTC9BQ8N6N2 239 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 LSMEM1Q8N8F7 131 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 HNRNPLLQ8WVV9 542 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 USP13Q92995 863 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ATP2A3Q93084 1043 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 JAKMIP2Q96AA8 810 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 CHFRQ96EP1 664 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ZBTB45Q96K62 511 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 SENP8Q96LD8 212 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 CNOT6LQ96LI5 555 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 DMRTB1Q96MA1 342 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 FAM129BQ96TA1 746 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 NTPCRQ9BSD7 190 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 TACO1Q9BSH4 297 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 TIPINQ9BVW5 301 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 TPSD1Q9BZJ3 242 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 C7orf69Q9H7B7 122 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ECT2Q9H8V3 914 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 MED4Q9NPJ6 270 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 BLOC1S4Q9NUP1 217 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 DDX19AQ9NUU7 478 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 POLR3BQ9NW08 1133 aaPredicted RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 DUS2Q9NX74 493 aaKnown RBP7.17□□□□□ -1.26
HDAC3-209ENST00000486618 NKIRAS2Q9NYR9 191 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 LRWD1Q9UFC0 647 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 CCL26Q9Y258 94 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 INVSQ9Y283 1065 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 ANK1P16157 1881 aa7.17□□□□□ -1.26
HDAC3-209ENST00000486618 FLNBO75369 2602 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 URB1O60287 2271 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 MYO16Q9Y6X6 1858 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 LOC100289279A0A1B0GTE1 492 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 A0A1W2PP55 124 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 HMX2A2RU54 273 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 MEGF11A6BM72 1044 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 EIF4E1BA6NMX2 242 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 H0YCG3 227 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 CASQ2O14958 399 aaPredicted RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 SART1O43290 800 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 RFPL1O75677 317 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 KRT38O76015 456 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 CYP11A1P05108 521 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 CSH1P0DML2 217 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 CSH2P0DML3 217 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 HAPLN1P10915 354 aaPredicted RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 RPS2P15880 293 aaKnown RBP7.16□□□□□ -1.26
HDAC3-209ENST00000486618 ATF6P18850 670 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 HOXD12P35452 270 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 MAPK9P45984 424 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 PDE6CP51160 858 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 SPAG1Q07617 926 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 MTF1Q14872 753 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 ZNF174Q15697 407 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 ZNF423Q2M1K9 1284 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 SPDYCQ5MJ68 293 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 SPATA1Q5VX52 437 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 FAAH2Q6GMR7 532 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 ALG1LQ6GMV1 187 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 ANO7Q6IWH7 933 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 FAM180BQ6P0A1 224 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 C4orf50Q6ZRC1 276 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 MILR1Q7Z6M3 343 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 PROSER1Q86XN7 944 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 THNSL2Q86YJ6 484 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 SYT12Q8IV01 421 aa7.16□□□□□ -1.26
HDAC3-209ENST00000486618 CCNJLQ8IV13 435 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms