RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 HIST1H2AGP0C0S8 130 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SMPD1P17405 629 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 HIST1H2ADP20671 130 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 YWHAQP27348 245 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 ITGA7Q13683 1181 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 FAM83EQ2M2I3 478 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 MARC1Q5VT66 337 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 CES5AQ6NT32 575 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 BBS12Q6ZW61 710 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 MAB21L3Q8N8X9 362 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 HIST1H2AHQ96KK5 128 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 CATSPER2Q96P56 530 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 HIST1H2AJQ99878 128 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 H2AFJQ9BTM1 129 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 ATXN3LQ9H3M9 355 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 PDZD7Q9H5P4 517 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 FAM105AQ9NUU6 356 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SMPD4Q9NXE4 827 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 DRG1Q9Y295 367 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 CDY1Q9Y6F8 540 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 RPTORQ8N122 1335 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SMIM28A0A1B0GU29 152 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 OXCT1P55809 520 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 LRRC57Q8N9N7 239 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 JADE3Q92613 823 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 B3GNT5Q9BYG0 378 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 CIPCQ9C0C6 399 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 APOBEC3GQ9HC16 384 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 MRPL17Q9NRX2 175 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 COL1A2P08123 1366 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 TMEM247A6NEH6 219 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 PDE5AO76074 875 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 ENO3P13929 434 aaPredicted RBP11.27□□□□□ -0.6
HDAC6-228ENST00000486227 ATP6V1B1P15313 513 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 ARL4DP49703 201 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 TMCO4Q5TGY1 634 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 GIPC2Q8TF65 315 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 NMD3Q96D46 503 aaKnown RBP11.27□□□□□ -0.6
HDAC6-228ENST00000486227 CCT7Q99832 543 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 UXTQ9UBK9 157 aaPredicted RBP11.27□□□□□ -0.6
HDAC6-228ENST00000486227 TAGLN3Q9UI15 199 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 PLA2G4CQ9UP65 541 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 PDE4DIPQ5VU43 2346 aa11.27□□□□□ -0.6
HDAC6-228ENST00000486227 TCRBV7S2A1N4TA0A589 114 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 SUPT3HB4E1H0 165 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 SUPT3HO75486 399 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 PSMG1O95456 288 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 CLPTM1O96005 669 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 BGNP21810 368 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 MAP4P27816 1152 aaKnown RBP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 GSTT1P30711 240 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 FOXD4Q12950 439 aaPredicted RBP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 BNIP1Q12981 228 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 SH3D19Q5HYK7 790 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 C9orf57Q5W0N0 161 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 PLEKHA7Q6IQ23 1121 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 MRNIPQ6NTE8 343 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 EXOC3L1Q86VI1 746 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 HERC6Q8IVU3 1022 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 NCLNQ969V3 563 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 ZFP42Q96MM3 310 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 TEPSINQ96N21 525 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 SERPINB11Q96P15 392 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 KLHL4Q9C0H6 718 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 HIPK3Q9H422 1215 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 OR12D3Q9UGF7 316 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 PKP3Q9Y446 797 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 CICQ96RK0 1608 aaPredicted RBP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 RNF103-CHMP3A0A140T963 221 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 CBX4O00257 560 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 AIM2O14862 343 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 ERBB2P04626 1255 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 RHOCP08134 193 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 CTNNB1P35222 781 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 MBTD1Q05BQ5 628 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 LBRQ14739 615 aaKnown RBP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 GSTA3Q16772 222 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 POLNQ7Z5Q5 900 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 UNC45BQ8IWX7 931 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 CARNMT1Q8N4J0 409 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 TBC1D19Q8N5T2 526 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 ALLCQ8N6M5 410 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 TCP10LQ8TDR4 215 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 EME1Q96AY2 570 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 DCDC2Q9UHG0 476 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 SLC25A13Q9UJS0 675 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 NOCTQ9UK39 431 aaKnown RBP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 TSPAN1O60635 241 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 RAMP2O60895 175 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 PIAS1O75925 651 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 CKBP12277 381 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 HMOX2P30519 316 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 CHKAP35790 457 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 SERPINB8P50452 374 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 FAAP100Q0VG06 881 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 CWF19L1Q69YN2 538 aaKnown RBP11.27□□□□□ -0.61
HDAC6-228ENST00000486227 C16orf89Q6UX73 402 aa11.27□□□□□ -0.61
HDAC6-228ENST00000486227 RASGEF1CQ8N431 466 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms