RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CYP3A4P08684 503 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 HOXB2P14652 356 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 AKT1P31749 480 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 CIITAP33076 1130 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 THBS3P49746 956 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 HTR6P50406 440 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 PRTGQ2VWP7 1150 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 XRRA1Q6P2D8 792 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 GGT6Q6P531 493 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 DDIASQ8IXT1 998 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 NRSN1Q8IZ57 195 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 PAQR4Q8N4S7 273 aaPredicted RBP4.41□□□□□ -1.7
VPS41-213ENST00000485955 TMEM199Q8N511 208 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 CLEC4CQ8WTT0 213 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 WDR60Q8WVS4 1066 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 ASB5Q8WWX0 329 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 ATP2A3Q93084 1043 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 TMEM41AQ96HV5 264 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 REXO5Q96IC2 774 aaKnown RBP4.41□□□□□ -1.7
VPS41-213ENST00000485955 WDR83Q9BRX9 315 aaKnown RBP4.41□□□□□ -1.7
VPS41-213ENST00000485955 OSBPL5Q9H0X9 879 aaPredicted RBP4.41□□□□□ -1.7
VPS41-213ENST00000485955 TP63Q9H3D4 680 aaPredicted RBP4.41□□□□□ -1.7
VPS41-213ENST00000485955 SFXN1Q9H9B4 322 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 TXNRD2Q9NNW7 524 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 SPAG4Q9NPE6 437 aa4.41□□□□□ -1.7
VPS41-213ENST00000485955 TRPC5Q9UL62 973 aaPredicted RBP4.41□□□□□ -1.7
VPS41-213ENST00000485955 DPPA5A6NC42 116 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 TNFRSF6BO95407 300 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 TKTP29401 623 aaKnown RBP4.4□□□□□ -1.71
VPS41-213ENST00000485955 SERPINB3P29508 390 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 TLE3Q04726 772 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 SPARCL1Q14515 664 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 PTGR1Q14914 329 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 C6orf10Q5SRN2 563 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 DAB2IPQ5VWQ8 1189 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 RUSC1-AS1Q66K80 236 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 TMEM174Q8WUU8 243 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 IP6K1Q92551 441 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 MARK4Q96L34 752 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 ELAC2Q9BQ52 826 aaKnown RBP4.4□□□□□ -1.71
VPS41-213ENST00000485955 OBP2BQ9NPH6 170 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 NLRC4Q9NPP4 1024 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 ANAPC4Q9UJX5 808 aa4.4□□□□□ -1.71
VPS41-213ENST00000485955 IGKV2D-30A0A075B6S6 120 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 CYP3A7-CYP3A51PA0A087WV96 503 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 FAM90A18PA6NE21 464 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 CXorf65A6NEN9 183 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 FAM90A16PA6NEW6 464 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 FAM90A9PA6NNJ1 464 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 FAM90A5PA8MXJ8 464 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 RHODO00212 210 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 ZC3H11AO75152 810 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS41-213ENST00000485955 NFATC1O95644 943 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 SYF2O95926 243 aaKnown RBP4.39□□□□□ -1.71
VPS41-213ENST00000485955 FAM90A15PP0C7V4 464 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 FAM90A14PP0C7W9 464 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 GYS1P13807 737 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 CYP3A7P24462 503 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 CCKBRP32239 447 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 GRK5P34947 590 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 TECP42680 631 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 POLD2P49005 469 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 RBM6P78332 1123 aaKnown RBP4.39□□□□□ -1.71
VPS41-213ENST00000485955 PPATQ06203 517 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 STARD3Q14849 445 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 BTBD16Q32M84 506 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 ISM2Q6H9L7 571 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 HMBOX1Q6NT76 420 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 LRIG3Q6UXM1 1119 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 MEPCEQ7L2J0 689 aaKnown RBP4.39□□□□□ -1.71
VPS41-213ENST00000485955 RTL10Q7L3V2 364 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 MDGA2Q7Z553 956 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 GPSM1Q86YR5 675 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 SVIPQ8NHG7 77 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 HTATIP2Q9BUP3 242 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 FZD3Q9NPG1 666 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 ZNF580Q9UK33 172 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 FBXO4Q9UKT5 387 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 CNTN6Q9UQ52 1028 aa4.39□□□□□ -1.71
VPS41-213ENST00000485955 ZNF335Q9H4Z2 1342 aaPredicted RBP4.39□□□□□ -1.71
VPS41-213ENST00000485955 SLC38A8A6NNN8 435 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 LGALS16A8MUM7 142 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 FOXO6A8MYZ6 492 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 FFAR2O15552 330 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 SMAD6O43541 496 aaKnown RBP4.38□□□□□ -1.71
VPS41-213ENST00000485955 ALDOAP04075 364 aaKnown RBP4.38□□□□□ -1.71
VPS41-213ENST00000485955 P2RX3P56373 397 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 GAD2Q05329 585 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 BTKQ06187 659 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 SF3A3Q12874 501 aaKnown RBP eCLIP4.38□□□□□ -1.71
VPS41-213ENST00000485955 ZNF569Q5MCW4 686 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 CCSAPQ6IQ19 270 aaPredicted RBP4.38□□□□□ -1.71
VPS41-213ENST00000485955 CRELD2Q6UXH1 353 aaPredicted RBP4.38□□□□□ -1.71
VPS41-213ENST00000485955 ADPRHL1Q8NDY3 354 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 FAM71BQ8TC56 605 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 ADAMTS15Q8TE58 950 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 INPP5DQ92835 1189 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 LYZL4Q96KX0 146 aa4.38□□□□□ -1.71
VPS41-213ENST00000485955 ADAD1Q96M93 576 aaKnown RBP4.38□□□□□ -1.71
VPS41-213ENST00000485955 SORBS1Q9BX66 1292 aaKnown RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms