RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SGCZQ96LD1 299 aa3.67□□□□□ -1.82
VPS50-216ENST00000484954 OSBPL5Q9H0X9 879 aaPredicted RBP3.67□□□□□ -1.82
VPS50-216ENST00000484954 MRPL44Q9H9J2 332 aaKnown RBP3.67□□□□□ -1.82
VPS50-216ENST00000484954 ARNT2Q9HBZ2 717 aa3.67□□□□□ -1.82
VPS50-216ENST00000484954 ERVK-5Q9HDB9 667 aa3.67□□□□□ -1.82
VPS50-216ENST00000484954 HELLSQ9NRZ9 838 aa3.67□□□□□ -1.82
VPS50-216ENST00000484954 SLC52A1Q9NWF4 448 aa3.67□□□□□ -1.82
VPS50-216ENST00000484954 CDC23Q9UJX2 597 aa3.67□□□□□ -1.82
VPS50-216ENST00000484954 ANAPC4Q9UJX5 808 aa3.67□□□□□ -1.82
VPS50-216ENST00000484954 FBXO4Q9UKT5 387 aa3.67□□□□□ -1.82
VPS50-216ENST00000484954 TRPC5Q9UL62 973 aaPredicted RBP3.67□□□□□ -1.82
VPS50-216ENST00000484954 EVPLQ92817 2033 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 FAM90A8PA6NJQ4 464 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 H0YGN5 161 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 PRPF4O43172 522 aaKnown RBP eCLIP3.66□□□□□ -1.82
VPS50-216ENST00000484954 DNPH1O43598 174 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 ASNA1O43681 348 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 ALDOCP09972 364 aaKnown RBP3.66□□□□□ -1.82
VPS50-216ENST00000484954 NBPF7P0C2Y1 421 aaPredicted RBP3.66□□□□□ -1.82
VPS50-216ENST00000484954 FAM90A13PP0C7W8 464 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 FAM90A24PP0C7X0 464 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 PLA2G2AP14555 144 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 NPPBP16860 134 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 IGFBP2P18065 325 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 TGM2P21980 687 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 AKT1P31749 480 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 CIITAP33076 1130 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 CDKN2AP42771 156 aaKnown RBP3.66□□□□□ -1.82
VPS50-216ENST00000484954 POLD2P49005 469 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 GAD2Q05329 585 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 ERV3-1Q14264 604 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 UBAP2Q5T6F2 1119 aaKnown RBP3.66□□□□□ -1.82
VPS50-216ENST00000484954 ARL6IP4Q66PJ3 421 aaKnown RBP3.66□□□□□ -1.82
VPS50-216ENST00000484954 KIAA1161Q6NSJ0 714 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 WDR93Q6P2C0 686 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 RTL10Q7L3V2 364 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 MDGA2Q7Z553 956 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 SRLQ86TD4 932 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 TRABD2AQ86V40 505 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 SKAP1Q86WV1 359 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 PAQR4Q8N4S7 273 aaPredicted RBP3.66□□□□□ -1.82
VPS50-216ENST00000484954 TMEM174Q8WUU8 243 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 ATP2A3Q93084 1043 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 MUL1Q969V5 352 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 FAR2Q96K12 515 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 LYZL4Q96KX0 146 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 WDR83Q9BRX9 315 aaKnown RBP3.66□□□□□ -1.82
VPS50-216ENST00000484954 HIPK2Q9H2X6 1198 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 TM7SF3Q9NS93 570 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 SLC12A4Q9UP95 1085 aa3.66□□□□□ -1.82
VPS50-216ENST00000484954 HNRNPDLO14979 420 aaKnown RBP3.65□□□□□ -1.83
VPS50-216ENST00000484954 ZC3H11AO75152 810 aaKnown RBP eCLIP3.65□□□□□ -1.83
VPS50-216ENST00000484954 TNFRSF6BO95407 300 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 GLP2RO95838 553 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 SEMA3AQ14563 771 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 BTBD16Q32M84 506 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 KRTAP27-1Q3LI81 207 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 ARL13AQ5H913 290 aaPredicted RBP3.65□□□□□ -1.83
VPS50-216ENST00000484954 RINT1Q6NUQ1 792 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 XRRA1Q6P2D8 792 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 LRIG3Q6UXM1 1119 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 C11orf96Q7Z7L8 435 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 TTC30AQ86WT1 665 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 FAM47BQ8NA70 645 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 ZBTB8BQ8NAP8 495 aaPredicted RBP3.65□□□□□ -1.83
VPS50-216ENST00000484954 SMRP1Q8NCR6 262 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 SRFBP1Q8NEF9 429 aaKnown RBP3.65□□□□□ -1.83
VPS50-216ENST00000484954 STYXQ8WUJ0 223 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 PMM1Q92871 262 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 ZNF479Q96JC4 524 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 PRPF18Q99633 342 aaKnown RBP3.65□□□□□ -1.83
VPS50-216ENST00000484954 CCDC134Q9H6E4 229 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 MAP6D1Q9H9H5 199 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 TXNRD2Q9NNW7 524 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 CHST12Q9NRB3 414 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 LZTS1Q9Y250 596 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 ZBTB1Q9Y2K1 713 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 LMTK3Q96Q04 1460 aa3.65□□□□□ -1.83
VPS50-216ENST00000484954 TRIP12Q14669 1992 aaPredicted RBP3.65□□□□□ -1.83
VPS50-216ENST00000484954 DPPA5A6NC42 116 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FAM90A18PA6NE21 464 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FAM90A16PA6NEW6 464 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FAM90A9PA6NNJ1 464 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FAM90A5PA8MXJ8 464 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FOXO6A8MYZ6 492 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 TNFRSF13BO14836 293 aaPredicted RBP3.64□□□□□ -1.83
VPS50-216ENST00000484954 NEURL1O76050 574 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 NFATC1O95644 943 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 KRT18P05783 430 aaKnown RBP3.64□□□□□ -1.83
VPS50-216ENST00000484954 CYP3A4P08684 503 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FAM90A15PP0C7V4 464 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FAM90A14PP0C7W9 464 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 GYS1P13807 737 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 ALDH18A1P54886 795 aaKnown RBP3.64□□□□□ -1.83
VPS50-216ENST00000484954 TBX4P57082 545 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 TLE3Q04726 772 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 PICALMQ13492 652 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 HLTFQ14527 1009 aaKnown RBP eCLIP3.64□□□□□ -1.83
VPS50-216ENST00000484954 ISM2Q6H9L7 571 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 DEPTORQ8TB45 409 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms