RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 TMEM110Q86TL2 294 aa22.33■■□□□ 1.17
USP40-215ENST00000484528 IRF2BP1Q8IU81 584 aa22.33■■□□□ 1.17
USP40-215ENST00000484528 ZNF557Q8N988 423 aaPredicted RBP22.33■■□□□ 1.17
USP40-215ENST00000484528 TTC17Q96AE7 1141 aa22.33■■□□□ 1.17
USP40-215ENST00000484528 IL21RQ9HBE5 538 aa22.33■■□□□ 1.17
USP40-215ENST00000484528 POPDC2Q9HBU9 364 aa22.33■■□□□ 1.17
USP40-215ENST00000484528 AJAP1Q9UKB5 411 aaPredicted RBP22.33■■□□□ 1.17
USP40-215ENST00000484528 SYNJ2BP-COX16A0A087WUM0 186 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 LUC7L3O95232 432 aaKnown RBP22.32■■□□□ 1.16
USP40-215ENST00000484528 SEMA4FO95754 770 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 PROS1P07225 676 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 TACR2P21452 398 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 MTIF2P46199 727 aaKnown RBP22.32■■□□□ 1.16
USP40-215ENST00000484528 ST8SIA6P61647 398 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 YWHAZP63104 245 aaKnown RBP22.32■■□□□ 1.16
USP40-215ENST00000484528 BNC1Q01954 994 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 EXOC3L4Q17RC7 722 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 PITRM1Q5JRX3 1037 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 CCDC117Q8IWD4 279 aaPredicted RBP22.32■■□□□ 1.16
USP40-215ENST00000484528 DHX40Q8IX18 779 aaKnown RBP22.32■■□□□ 1.16
USP40-215ENST00000484528 TRIM62Q9BVG3 475 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 THAP9Q9H5L6 903 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 FAM204AQ9H8W3 233 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 FBRSQ9HAH7 460 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 COX16Q9P0S2 106 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 SUN2Q9UH99 717 aa22.32■■□□□ 1.16
USP40-215ENST00000484528 A0A1B0GVT2 93 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 SIN3BO75182 1162 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 IGLV3-25P01717 112 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 PNMA6AP0CW24 399 aaPredicted RBP22.31■■□□□ 1.16
USP40-215ENST00000484528 PON1P27169 355 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 TTC31Q49AM3 519 aaPredicted RBP22.31■■□□□ 1.16
USP40-215ENST00000484528 ZNF776Q68DI1 518 aaPredicted RBP22.31■■□□□ 1.16
USP40-215ENST00000484528 BEND5Q7L4P6 421 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 CIR1Q86X95 450 aaPredicted RBP22.31■■□□□ 1.16
USP40-215ENST00000484528 NAXDQ8IW45 347 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 C1orf216Q8TAB5 229 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 SHC3Q92529 594 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 MRGPRX3Q96LB0 322 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 CPXM1Q96SM3 734 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 ZDHHC5Q9C0B5 715 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 BTBD1Q9H0C5 482 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 GAREM1Q9H706 876 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 KLK13Q9UKR3 277 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 ZBTB32Q9Y2Y4 487 aaPredicted RBP22.31■■□□□ 1.16
USP40-215ENST00000484528 CEP83Q9Y592 693 aa22.31■■□□□ 1.16
USP40-215ENST00000484528 H0Y626 953 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 GRAP2O75791 330 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 FSBPO95073 299 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 ASLP04424 464 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 CSNK1EP49674 416 aaKnown RBP22.3■■□□□ 1.16
USP40-215ENST00000484528 SLC14A1Q13336 389 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 TPD52L1Q16890 204 aaPredicted RBP22.3■■□□□ 1.16
USP40-215ENST00000484528 LAYNQ6UX15 382 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 APCDD1Q8J025 514 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 DEFB106AQ8N104 65 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 WDTC1Q8N5D0 677 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 GANCQ8TET4 914 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 BTN2A3PQ96KV6 586 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 FAM81BQ96LP2 452 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 TMEM121BQ9BXQ6 578 aaPredicted RBP22.3■■□□□ 1.16
USP40-215ENST00000484528 PCED1AQ9H1Q7 454 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 RSPH9Q9H1X1 276 aaPredicted RBP22.3■■□□□ 1.16
USP40-215ENST00000484528 SIX2Q9NPC8 291 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 ERVW-1Q9UQF0 538 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 FNDC3AQ9Y2H6 1198 aaKnown RBP22.3■■□□□ 1.16
USP40-215ENST00000484528 CFAP47Q6ZTR5 3102 aa22.3■■□□□ 1.16
USP40-215ENST00000484528 TTC34A8MYJ7 566 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 MATKP42679 507 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 ZBTB16Q05516 673 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 HNRNPA1L2Q32P51 320 aaKnown RBP22.29■■□□□ 1.16
USP40-215ENST00000484528 HSP90AA4PQ58FG1 418 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 C1orf131Q8NDD1 294 aaKnown RBP22.29■■□□□ 1.16
USP40-215ENST00000484528 GATA6Q92908 595 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 BIRC7Q96CA5 298 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 PPP1R13BQ96KQ4 1090 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 DDIT4Q9NX09 232 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 SERGEFQ9UGK8 458 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 PCDHB9Q9Y5E1 797 aa22.29■■□□□ 1.16
USP40-215ENST00000484528 FAM170AA1A519 330 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 FAM47DPA6NHR8 397 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 F5H5T6 163 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 MOCS3O95396 460 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 CER1O95813 267 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 C7P10643 843 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 STK19P49842 368 aaPredicted RBP22.28■■□□□ 1.16
USP40-215ENST00000484528 CDK17Q00537 523 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 TRIP6Q15654 476 aaKnown RBP22.28■■□□□ 1.16
USP40-215ENST00000484528 HLA-BQ31612 363 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 OR6B2Q6IFH4 312 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 FAM183BPQ6ZVS7 135 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 CHCHD4Q8N4Q1 142 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 ATP6V0D2Q8N8Y2 350 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 MLKLQ8NB16 471 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 RNF34Q969K3 372 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 RPL10LQ96L21 214 aaKnown RBP22.28■■□□□ 1.16
USP40-215ENST00000484528 PABPC3Q9H361 631 aaKnown RBP22.28■■□□□ 1.16
USP40-215ENST00000484528 PLCB1Q9NQ66 1216 aa22.28■■□□□ 1.16
USP40-215ENST00000484528 KIAA1522Q9P206 1035 aaPredicted RBP22.28■■□□□ 1.16
USP40-215ENST00000484528 SLCO3A1Q9UIG8 710 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms