RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	ANAPC1	Q9H1A4	1944 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	BCLAF3	A2AJT9	711 aa	Known RBP	11.55	□□□□□ -0.56
APTX-223	ENST00000479656	KCNN4	O15554	427 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	XYLB	O75191	536 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	MOSPD3	O75425	235 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	OLFM2	O95897	454 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	IVD	P26440	423 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	TNFRSF8	P28908	595 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	CORO1A	P31146	461 aa	Known RBP	11.55	□□□□□ -0.56
APTX-223	ENST00000479656	HOXC13	P31276	330 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	STIP1	P31948	543 aa	Known RBP	11.55	□□□□□ -0.56
APTX-223	ENST00000479656	HTR7	P34969	479 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	ADCY8	P40145	1251 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	SLC11A2	P49281	568 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	IRAK1	P51617	712 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	EPHA5	P54756	1037 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	XRCC4	Q13426	336 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	CHSY1	Q86X52	802 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	CCDC89	Q8N998	374 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	TTC16	Q8NEE8	873 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	SHKBP1	Q8TBC3	707 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	MYEOV	Q96EZ4	313 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	CELF6	Q96J87	481 aa	Known RBP	11.55	□□□□□ -0.56
APTX-223	ENST00000479656	OLFM3	Q96PB7	478 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	LGMN	Q99538	433 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	NEUROG2	Q9H2A3	272 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	NDFIP2	Q9NV92	336 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	ZDHHC7	Q9NXF8	308 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	CPQ	Q9Y646	472 aa		11.55	□□□□□ -0.56
APTX-223	ENST00000479656	DRGX	A6NNA5	263 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	SCAMP3	O14828	347 aa	Known RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	FGF10	O15520	208 aa	Predicted RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	ERLIN1	O75477	346 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	CNTN5	O94779	1100 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	SEC31A	O94979	1220 aa	Known RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	CKM	P06732	381 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	TACR2	P21452	398 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	ECHS1	P30084	290 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	SLC6A4	P31645	630 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	PLTP	P55058	493 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	MTA1	Q13330	715 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	CUL1	Q13616	776 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	TEAD2	Q15562	447 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	ALF	Q53S48	1182 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	SLC45A4	Q5BKX6	768 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	GPR158	Q5T848	1215 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	RFWD3	Q6PCD5	774 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	LGI2	Q8N0V4	545 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	CCNY	Q8ND76	341 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	VN1R2	Q8NFZ6	395 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	ADAMTS19	Q8TE59	1207 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	TFB1M	Q8WVM0	346 aa	Known RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	HNRNPLL	Q8WVV9	542 aa	Known RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	ZNF707	Q96C28	371 aa	Predicted RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	MRPL38	Q96DV4	380 aa	Known RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	GDAP1L1	Q96MZ0	367 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	RPRD1A	Q96P16	312 aa	Predicted RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	ZYG11B	Q9C0D3	744 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	KLC2	Q9H0B6	622 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	PRDM12	Q9H4Q4	367 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	GRHL1	Q9NZI5	618 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	PPARGC1A	Q9UBK2	798 aa	Known RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	AGO1	Q9UL18	857 aa	Known RBP	11.54	□□□□□ -0.56
APTX-223	ENST00000479656	CEP290	O15078	2479 aa		11.54	□□□□□ -0.56
APTX-223	ENST00000479656	IGLV3-10	A0A075B6K4	115 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	TRAV19	A0A0A6YYK7	116 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	TRDMT1	O14717	391 aa	Known RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	FGF19	O95750	216 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	FAM153B	P0C7A2	387 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	RPL22	P35268	128 aa	Known RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	AP1B1	Q10567	949 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	GPS1	Q13098	491 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	KCNC3	Q14003	757 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	PDK1	Q15118	436 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	SLC5A9	Q2M3M2	681 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	FAM153C	Q494X1	144 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	FAM133B	Q5BKY9	247 aa	Known RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	BEND6	Q5SZJ8	279 aa	Predicted RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	ACBD5	Q5T8D3	534 aa	Predicted RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	ELMSAN1	Q6PJG2	1045 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	TMC5	Q6UXY8	1006 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	TFAP2D	Q7Z6R9	452 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	NLRP14	Q86W24	1093 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	CFAP52	Q8N1V2	620 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	RTL3	Q8N8U3	475 aa	Known RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	AZIN2	Q96A70	460 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	SMG9	Q9H0W8	520 aa	Known RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	PIDD1	Q9HB75	910 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	ARFGAP3	Q9NP61	516 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	FAM153A	Q9UHL3	310 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	LAMA3	Q16787	3333 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	WASH4P	A8MWX3	477 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	HACD1	B0YJ81	288 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656		F5H5T6	163 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	VAV1	P15498	845 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	RHOQ	P17081	205 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	ITIH2	P19823	946 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	SERPINB6	P35237	376 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	SLC7A9	P82251	487 aa		11.53	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms