RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 ADGRF1Q5T601 910 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 SEL1L2Q5TEA6 688 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 KAZNQ674X7 775 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 BBS12Q6ZW61 710 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 DDX42Q86XP3 938 aaKnown RBP eCLIP13.52□□□□□ -0.25
CHD3-210ENST00000479080 CCDC50Q8IVM0 306 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 ARHGAP12Q8IWW6 846 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 CPXM2Q8N436 756 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 CELF5Q8N6W0 485 aaKnown RBP13.52□□□□□ -0.25
CHD3-210ENST00000479080 OR52K2Q8NGK3 314 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 WFDC5Q8TCV5 224 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 ACTRT1Q8TDG2 376 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 HLA-CQ95604 372 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 TBC1D31Q96DN5 1066 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 KXD1Q9BQD3 176 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 L2HGDHQ9H9P8 463 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 OBP2AQ9NY56 170 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 PPARGC1AQ9UBK2 798 aaKnown RBP13.52□□□□□ -0.25
CHD3-210ENST00000479080 CDC23Q9UJX2 597 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 CLEC4EQ9ULY5 219 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 SH3BP1Q9Y3L3 701 aa13.52□□□□□ -0.25
CHD3-210ENST00000479080 WASH4PA8MWX3 477 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 ANHXE9PGG2 379 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 IL9P15248 144 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 SLC11A2P49281 568 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 TPI1P60174 286 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 GBE1Q04446 702 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 SMAD2Q15796 467 aaKnown RBP13.51□□□□□ -0.25
CHD3-210ENST00000479080 KCTD19Q17RG1 926 aaPredicted RBP13.51□□□□□ -0.25
CHD3-210ENST00000479080 EML3Q32P44 896 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 ZFYVE27Q5T4F4 411 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 FYB2Q5VWT5 728 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 TRIM68Q6AZZ1 485 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 ADAT2Q7Z6V5 191 aaKnown RBP13.51□□□□□ -0.25
CHD3-210ENST00000479080 RFX6Q8HWS3 928 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 CFAP52Q8N1V2 620 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 MAFAQ8NHW3 353 aaPredicted RBP13.51□□□□□ -0.25
CHD3-210ENST00000479080 BPIFB1Q8TDL5 484 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 ZFYVE19Q96K21 471 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 EPAS1Q99814 870 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 FAM118BQ9BPY3 351 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 HPS4Q9NQG7 708 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 SAE1Q9UBE0 346 aaPredicted RBP13.51□□□□□ -0.25
CHD3-210ENST00000479080 LSM7Q9UK45 103 aaKnown RBP13.51□□□□□ -0.25
CHD3-210ENST00000479080 EFR3BQ9Y2G0 817 aa13.51□□□□□ -0.25
CHD3-210ENST00000479080 ZFP37Q9Y6Q3 630 aaPredicted RBP13.51□□□□□ -0.25
CHD3-210ENST00000479080 COL4A2P08572 1712 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 OTOL1A6NHN0 477 aaPredicted RBP13.5□□□□□ -0.25
CHD3-210ENST00000479080 F5H5T6 163 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 CST8O60676 142 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 MAP3K6O95382 1288 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 ARSAP15289 507 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 HOXD9P28356 352 aaPredicted RBP13.5□□□□□ -0.25
CHD3-210ENST00000479080 EPHB2P29323 1055 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 ARL4AP40617 200 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 DYNLT1P63172 113 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 FCHO2Q0JRZ9 810 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 GRM2Q14416 872 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 PAFAH1B3Q15102 231 aaKnown RBP13.5□□□□□ -0.25
CHD3-210ENST00000479080 FAM182AQ5T1J6 154 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 AFMIDQ63HM1 303 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 CXorf57Q6NSI4 855 aaKnown RBP13.5□□□□□ -0.25
CHD3-210ENST00000479080 ZNF572Q7Z3I7 529 aaPredicted RBP13.5□□□□□ -0.25
CHD3-210ENST00000479080 TFAP2DQ7Z6R9 452 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 TMEM25Q86YD3 366 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 CCDC33Q8N5R6 958 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 RTL3Q8N8U3 475 aaKnown RBP13.5□□□□□ -0.25
CHD3-210ENST00000479080 PRELID2Q8N945 189 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 TDRD5Q8NAT2 981 aaKnown RBP13.5□□□□□ -0.25
CHD3-210ENST00000479080 LRRN4Q8WUT4 740 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 RSAD2Q8WXG1 361 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 ATG4AQ8WYN0 398 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 HAUS1Q96CS2 278 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 CHFRQ96EP1 664 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 RPRD1AQ96P16 312 aaPredicted RBP13.5□□□□□ -0.25
CHD3-210ENST00000479080 FAM83CQ9BQN1 747 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 TMEM248Q9NWD8 314 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 SLC12A6Q9UHW9 1150 aa13.5□□□□□ -0.25
CHD3-210ENST00000479080 PGRMC1O00264 195 aaKnown RBP13.49□□□□□ -0.25
CHD3-210ENST00000479080 ARNTLO00327 626 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 ECI2O75521 394 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 PENKP01210 267 aaPredicted RBP13.49□□□□□ -0.25
CHD3-210ENST00000479080 CYP17A1P05093 508 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 RHOQP17081 205 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 HTR7P34969 479 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 ZNF135P52742 658 aaPredicted RBP13.49□□□□□ -0.25
CHD3-210ENST00000479080 NOMO1Q15155 1222 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 LONRF2Q1L5Z9 754 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 ASTLQ6HA08 431 aaPredicted RBP13.49□□□□□ -0.25
CHD3-210ENST00000479080 RWDD4Q6NW29 188 aaKnown RBP13.49□□□□□ -0.25
CHD3-210ENST00000479080 TTC27Q6P3X3 843 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 RHBDF2Q6PJF5 856 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 MAP7D3Q8IWC1 876 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 KIAA1958Q8N8K9 716 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 OSCP1Q8WVF1 389 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 ELSPBP1Q96BH3 223 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 LMLNQ96KR4 655 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 OLFM3Q96PB7 478 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 PHF7Q9BWX1 381 aaPredicted RBP13.49□□□□□ -0.25
CHD3-210ENST00000479080 AP1M1Q9BXS5 423 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms