RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 STX10O60499 249 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 FOXD2O60548 495 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 PAPSS2O95340 614 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 OAS1P00973 400 aaKnown RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 HPXP02790 462 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 ESR1P03372 595 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TRIM49P0CI25 452 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TRIM49CP0CI26 452 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 EPB41P11171 864 aaKnown RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TDGF1P13385 188 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 ARSAP15289 507 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 YWHAQP27348 245 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 GTF2H1P32780 548 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 GCLMP48507 274 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 SERPINB4P48594 390 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 SLC5A3P53794 718 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 SLC7A9P82251 487 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 SATB1Q01826 763 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 PPP3CAQ08209 521 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 IFRD2Q12894 506 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TAF10Q12962 218 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 COBLL1Q53SF7 1204 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TMEM196Q5HYL7 178 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 ZNF658Q5TYW1 1059 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 SPOPLQ6IQ16 392 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 Q6ZS52 159 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 ACOT1Q86TX2 421 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 DDX42Q86XP3 938 aaKnown RBP eCLIP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 CRYBG2Q8N1P7 616 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 KIAA1958Q8N8K9 716 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 ENGASEQ8NFI3 743 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 RUBCNQ92622 972 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 SECISBP2LQ93073 1101 aaKnown RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 SMARCE1Q969G3 411 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 FBXO32Q969P5 355 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 ELMO3Q96BJ8 720 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TIGD1Q96MW7 591 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TSG101Q99816 390 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 DNAI2Q9GZS0 605 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 EPC1Q9H2F5 836 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 MMRN2Q9H8L6 949 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 ECT2Q9H8V3 914 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 FBRSQ9HAH7 460 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 CYP3A43Q9HB55 503 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TMEM8AQ9HCN3 771 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 DMAP1Q9NPF5 467 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 TMEM30AQ9NV96 361 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 COMMD8Q9NX08 183 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 SLAMF8Q9P0V8 285 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 WNT6Q9Y6F9 365 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 OTOGLQ3ZCN5 2332 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 DMDP11532 3685 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 EP300Q09472 2414 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 EML5Q05BV3 1969 aa7.19□□□□□ -1.26
CCDC88A-213ENST00000476903 DMXL1Q9Y485 3027 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 LEFTY2O00292 366 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 SLC9A3R1O14745 358 aaPredicted RBP7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 SLC16A3O15427 465 aaKnown RBP7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 ATG13O75143 517 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 PAGE1O75459 146 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 NFATC1O95644 943 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 OLFM2O95897 454 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 FAM200BP0CF97 657 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 MBL2P11226 248 aaPredicted RBP7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 CCDC130P13994 396 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 DRD1P21728 446 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 GJA4P35212 333 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 PRCPP42785 496 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 MXI1P50539 228 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 TUBP50607 506 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 INCA1Q0VD86 236 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 STIM1Q13586 685 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 FBXO43Q4G163 708 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 KRT39Q6A163 491 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 FSTL4Q6MZW2 842 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 PAQR9Q6ZVX9 377 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 FUKQ8N0W3 1084 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 SUMF1Q8NBK3 374 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 KCT2Q8NC54 265 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 SCAMP5Q8TAC9 235 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 SPATA20Q8TB22 786 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 SLC2A14Q8TDB8 520 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 TAS1R2Q8TE23 839 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 UBE2FQ969M7 185 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 ALKBH8Q96BT7 664 aaKnown RBP7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 FAXDC2Q96IV6 333 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 KCNC2Q96PR1 638 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 KCNK16Q96T55 309 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 P2RY13Q9BPV8 354 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 NT5C1AQ9BXI3 368 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 RNF38Q9H0F5 515 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 FBXO44Q9H4M3 255 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 APOBEC3GQ9HC16 384 aaKnown RBP7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 CBX8Q9HC52 389 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 CSNK1G1Q9HCP0 422 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 FAM49BQ9NUQ9 324 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 NCDNQ9UBB6 729 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 HMGXB4Q9UGU5 601 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 RAB23Q9ULC3 237 aa7.18□□□□□ -1.26
CCDC88A-213ENST00000476903 PCDHA5Q9Y5H7 936 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms