RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NAXDQ8IW45 347 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CHCHD4Q8N4Q1 142 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 HJURPQ8NCD3 748 aaPredicted RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SERPINB11Q96P15 392 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 SRRTQ9BXP5 876 aaKnown RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 NUCKS1Q9H1E3 243 aaKnown RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 KIAA1522Q9P206 1035 aaPredicted RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 FNDC3AQ9Y2H6 1198 aaKnown RBP12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 PCDHGB2Q9Y5G2 931 aa12.71□□□□□ -0.37
MSH5-SAPCD1-205ENST00000476085 CACNA1GO43497 2377 aa12.71□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 APC2O95996 2303 aa12.71□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TP53BP1Q12888 1972 aaPredicted RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PLXNA2O75051 1894 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 NYNRINQ9P2P1 1898 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SRRM3A6NNA2 597 aaPredicted RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 BECN2A8MW95 431 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TAF4O00268 1085 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SART1O43290 800 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 AFPP02771 609 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FTH1P19P0C7X4 201 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CSKP41240 450 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CSNK1EP49674 416 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 STX17P56962 302 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ARID5AQ03989 594 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PAK1Q13153 545 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 HNRNPA1L2Q32P51 320 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 DCAF6Q58WW2 860 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 C9orf64Q5T6V5 341 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 USP30Q70CQ3 517 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FAM124AQ86V42 546 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CACUL1Q86Y37 369 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 IRF2BP1Q8IU81 584 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MFN1Q8IWA4 741 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 WDTC1Q8N5D0 677 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 GOLGA1Q92805 767 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 BIRC7Q96CA5 298 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 FAM129BQ96TA1 746 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PRMT1Q99873 361 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 DDX50Q9BQ39 737 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MIS12Q9H081 205 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 BTBD1Q9H0C5 482 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 INTS2Q9H0H0 1204 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MIR1-1HGQ9H1L0 117 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MTG2Q9H4K7 406 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 GAREM1Q9H706 876 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SGK2Q9HBY8 427 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 UBE2TQ9NPD8 197 aaPredicted RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ACP6Q9NPH0 428 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TM7SF3Q9NS93 570 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TOR4AQ9NXH8 423 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 XPO7Q9UIA9 1087 aaKnown RBP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SCML1Q9UN30 329 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CTNND2Q9UQB3 1225 aa12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.7□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ITIH6Q6UXX5 1313 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 A0A1B0GVT2 93 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 KCNU1A8MYU2 1149 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 BIN1O00499 593 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SIN3BO75182 1162 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SEMA4FO95754 770 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CER1O95813 267 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ASLP04424 464 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 IGHV4-34P06331 123 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CD27P26842 260 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MATKP42679 507 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 GRIA4P48058 902 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 AFF3P51826 1226 aaKnown RBP12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PITX1P78337 314 aaPredicted RBP12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 KIF19Q2TAC6 998 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 KCNT1Q5JUK3 1230 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ZNF776Q68DI1 518 aaPredicted RBP12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 MMS22LQ6ZRQ5 1243 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ENOSF1Q7L5Y1 443 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TAC4Q86UU9 113 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ADAM32Q8TC27 787 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PABPC3Q9H361 631 aaKnown RBP12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 THAP9Q9H5L6 903 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 POPDC2Q9HBU9 364 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TM9SF3Q9HD45 589 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 STIM2Q9P246 746 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ADAMTS1Q9UHI8 967 aa12.69□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ITPR1Q14643 2758 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TARSL2A2RTX5 802 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 E5RJQ4 531 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 LUC7L3O95232 432 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TRUB2O95900 331 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 DNTTP04053 509 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 SRPRAP08240 638 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 RDXP35241 583 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CTSOP43234 321 aaPredicted RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 VASPP50552 380 aaPredicted RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PLK1P53350 603 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 GALCP54803 685 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 YWHAZP63104 245 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TAF5Q15542 800 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 ZC3H12AQ5D1E8 599 aaKnown RBP12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 PITRM1Q5JRX3 1037 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 DPY19L2P1Q6NXN4 242 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 TRIM65Q6PJ69 517 aa12.68□□□□□ -0.38
MSH5-SAPCD1-205ENST00000476085 CCNI2Q6ZMN8 369 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms