RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TBC1D3IA0A087WXS9 549 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3EA0A087X179 549 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3KA0A087X1G2 549 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 PMS2P1A4D2B8 440 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3FA6NER0 549 aaPredicted RBP8.4□□□□□ -1.06
USP54-211ENST00000474929 TTLL8A6PVC2 850 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3LB9A6J9 549 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 D6RAR5 112 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 NTN3O00634 580 aaPredicted RBP8.4□□□□□ -1.06
USP54-211ENST00000474929 WNT9AO14904 365 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 MID1O15344 667 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 FAM163BP0C2L3 166 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3HP0C7X1 549 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 RNF224P0DH78 156 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 LEPRP48357 1165 aaKnown RBP8.4□□□□□ -1.06
USP54-211ENST00000474929 COG7P83436 770 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TFAMQ00059 246 aaKnown RBP8.4□□□□□ -1.06
USP54-211ENST00000474929 MC1RQ01726 317 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 SOWAHAQ2M3V2 549 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 ADALQ6DHV7 355 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3GQ6DHY5 549 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3CQ6IPX1 549 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 RINT1Q6NUQ1 792 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 C1orf186Q6ZWK4 172 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 TBC1D3Q8IZP1 549 aaPredicted RBP8.4□□□□□ -1.06
USP54-211ENST00000474929 IL22RA1Q8N6P7 574 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 SNX29Q8TEQ0 813 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 DDI1Q8WTU0 396 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 GFM1Q96RP9 751 aaKnown RBP8.4□□□□□ -1.06
USP54-211ENST00000474929 CMKLR1Q99788 373 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 INTS2Q9H0H0 1204 aaKnown RBP8.4□□□□□ -1.06
USP54-211ENST00000474929 IL37Q9NZH6 218 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 CYTH4Q9UIA0 394 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 AGO2Q9UKV8 859 aaKnown RBP8.4□□□□□ -1.06
USP54-211ENST00000474929 TP53TG5Q9Y2B4 290 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 LOXL2Q9Y4K0 774 aa8.4□□□□□ -1.06
USP54-211ENST00000474929 PRAMEF33A0A0G2JMD5 474 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 K7ENM7 598 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 PRAMEF10O60809 474 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 ATP2C2O75185 946 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 TACC1O75410 805 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 C4BPAP04003 597 aaKnown RBP8.39□□□□□ -1.07
USP54-211ENST00000474929 ASLP04424 464 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 KRT19P08727 400 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 TMEM191BP0C7N4 346 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 WT1P19544 449 aaPredicted RBP8.39□□□□□ -1.07
USP54-211ENST00000474929 NOS2P35228 1153 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 ACOT2P49753 483 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 PSEN1P49768 467 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 ARID5BQ14865 1188 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 POSTNQ15063 836 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 KMT5BQ4FZB7 885 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 MPPE1Q53F39 396 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 TMEM215Q68D42 235 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 CHST9Q7L1S5 443 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 GDF7Q7Z4P5 450 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 ZNF366Q8N895 744 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.39□□□□□ -1.07
USP54-211ENST00000474929 C1orf127Q8N9H9 656 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 ZNF548Q8NEK5 533 aaPredicted RBP8.39□□□□□ -1.07
USP54-211ENST00000474929 KBTBD7Q8WVZ9 684 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 WBP2Q969T9 261 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 KIAA1143Q96AT1 154 aaPredicted RBP8.39□□□□□ -1.07
USP54-211ENST00000474929 SMARCD1Q96GM5 515 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 AIFM3Q96NN9 605 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 IL12RB2Q99665 862 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 CCDC3Q9BQI4 270 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 LARP6Q9BRS8 491 aaKnown RBP8.39□□□□□ -1.07
USP54-211ENST00000474929 RUSC1Q9BVN2 902 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 REPIN1Q9BWE0 567 aaKnown RBP8.39□□□□□ -1.07
USP54-211ENST00000474929 SNX25Q9H3E2 840 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 SEL1LQ9UBV2 794 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 SERGEFQ9UGK8 458 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 CHORDC1Q9UHD1 332 aaPredicted RBP8.39□□□□□ -1.07
USP54-211ENST00000474929 ODF2LQ9ULJ1 636 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 SLC5A6Q9Y289 635 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 KCTD3Q9Y597 815 aa8.39□□□□□ -1.07
USP54-211ENST00000474929 TARSL2A2RTX5 802 aaKnown RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 STC2O76061 302 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 PLCG1P19174 1290 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 POLR2EP19388 210 aaKnown RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 ITGB7P26010 798 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 PSMA5P28066 241 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 AKT2P31751 481 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 SLC8A1P32418 973 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 RECQLP46063 649 aaPredicted RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 PPP2CBP62714 309 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 PPP2CAP67775 309 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 CDC20Q12834 499 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 NR5A1Q13285 461 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 HNRNPA1L2Q32P51 320 aaKnown RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 CRTC2Q53ET0 693 aaPredicted RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 EARS2Q5JPH6 523 aaKnown RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 KRT79Q5XKE5 535 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 ESRP1Q6NXG1 681 aaKnown RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 LIMS2Q7Z4I7 341 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 ZFAND4Q86XD8 727 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 MCEMP1Q8IX19 187 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 CCDC13Q8IYE1 715 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 CSGALNACT2Q8N6G5 542 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms