RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 DMRT3Q9NQL9 472 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 KRT84Q9NSB2 600 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 UBP1Q9NZI7 540 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 FEM1BQ9UK73 627 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 DIMT1Q9UNQ2 313 aaKnown RBP3.59□□□□□ -1.84
UBR3-208ENST00000474426 MRPS2Q9Y399 296 aaKnown RBP3.59□□□□□ -1.84
UBR3-208ENST00000474426 PCDHA5Q9Y5H7 936 aa3.59□□□□□ -1.84
UBR3-208ENST00000474426 KLF2Q9Y5W3 355 aaPredicted RBP3.59□□□□□ -1.84
UBR3-208ENST00000474426 PCDH11XQ9BZA7 1347 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PCDH11YQ9BZA8 1340 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 H7C0C1 242 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 EFSO43281 561 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 AP1G1O43747 822 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 DNAJB6O75190 326 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 UPP2O95045 317 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 LUC7L3O95232 432 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 C22orf31O95567 290 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CHEK2O96017 543 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CNPP09543 421 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 HK1P19367 917 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PSMA2P25787 234 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 MCAMP43121 646 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 HCAR3P49019 387 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 IST1P53990 364 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ATXN3P54252 364 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 KRT17Q04695 432 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SCRN3Q0VDG4 424 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ACVR2BQ13705 512 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TOB2Q14106 344 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 KYNUQ16719 465 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TTC22Q5TAA0 569 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SLC9C2Q5TAH2 1124 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 C20orf194Q5TEA3 1177 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 RASIP1Q5U651 963 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 KCTD11Q693B1 232 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ANKRD40Q6AI12 368 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 FBXL19Q6PCT2 694 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SLC16A12Q6ZSM3 486 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CAMKMTQ7Z624 323 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CPLX4Q7Z7G2 160 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 VSTM4Q8IW00 320 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 OR7D4Q8NG98 312 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 OR52N1Q8NH53 320 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 KCNG4Q8TDN1 519 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ADAMTS15Q8TE58 950 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SEPT8Q92599 483 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 NT5C3BQ969T7 300 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ACSF2Q96CM8 615 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 LTV1Q96GA3 475 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 OLFM3Q96PB7 478 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 RANBP9Q96S59 729 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 RUSC1Q9BVN2 902 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 OSBPL1AQ9BXW6 950 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 LIN7BQ9HAP6 207 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SLC40A1Q9NP59 571 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TMEM184CQ9NVA4 438 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 KLHL3Q9UH77 587 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 NR2E3Q9Y5X4 410 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ERICH3Q5RHP9 1530 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SOS2Q07890 1332 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 FAM205CA6NFA0 338 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 NUTM2BA6NNL0 878 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 NUTM2EB1AL46 878 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 KCNJ18B7U540 433 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 N4BP3O15049 544 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SCAMP1O15126 338 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 BET1O15155 118 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TO15178 435 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CYTIPO60759 359 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 BEST1O76090 585 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PABPC1P11940 636 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 KCNA5P22460 613 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PTPREP23469 700 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 GSTM2P28161 218 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 NMT1P30419 496 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 OXTRP30559 389 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 NUP62P37198 522 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 DGKEP52429 567 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 HK2P52789 917 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 RAD23AP54725 363 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 GTF2IP78347 998 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 KCNJ12Q14500 433 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 GRIN2CQ14957 1233 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 DIXDC1Q155Q3 683 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TIGD6Q17RP2 521 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 LSM12Q3MHD2 195 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 GLE1Q53GS7 698 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 XKR4Q5GH76 650 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 DGKKQ5KSL6 1271 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TMEM240Q5SV17 173 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PTRHD1Q6GMV3 140 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 STOX1Q6ZVD7 989 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 NUTM2AQ8IVF1 878 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 GPR65Q8IYL9 337 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 MRPL43Q8N983 215 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 CNBD1Q8NA66 436 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 LEMD2Q8NC56 503 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 RAET1EQ8TD07 263 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 RFFLQ8WZ73 363 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 DDX1Q92499 740 aaKnown RBP3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms