RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 MYEOVQ96EZ4 313 aa20.47■□□□□ 0.87
COL9A3-210ENST00000472880 LMLNQ96KR4 655 aa20.47■□□□□ 0.87
COL9A3-210ENST00000472880 SLC4A5Q9BY07 1137 aa20.47■□□□□ 0.87
COL9A3-210ENST00000472880 POPDC2Q9HBU9 364 aa20.47■□□□□ 0.87
COL9A3-210ENST00000472880 SGK2Q9HBY8 427 aa20.47■□□□□ 0.87
COL9A3-210ENST00000472880 TJP2Q9UDY2 1190 aa20.47■□□□□ 0.87
COL9A3-210ENST00000472880 NCKAP1Q9Y2A7 1128 aa20.47■□□□□ 0.87
COL9A3-210ENST00000472880 FNDC3AQ9Y2H6 1198 aaKnown RBP20.47■□□□□ 0.87
COL9A3-210ENST00000472880 PAPSS1O43252 624 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-210ENST00000472880 RNASEH1O60930 286 aaKnown RBP20.46■□□□□ 0.87
COL9A3-210ENST00000472880 FSBPO95073 299 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 MOCS3O95396 460 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 FTH1P19P0C7X4 201 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 CSNK1EP49674 416 aaKnown RBP20.46■□□□□ 0.87
COL9A3-210ENST00000472880 BNC1Q01954 994 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 HNRNPA1L2Q32P51 320 aaKnown RBP20.46■□□□□ 0.87
COL9A3-210ENST00000472880 DCAF6Q58WW2 860 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 PITRM1Q5JRX3 1037 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 CREBRFQ8IUR6 639 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 LGI2Q8N0V4 545 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 CFAP52Q8N1V2 620 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 GANCQ8TET4 914 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 ZNF606Q8WXB4 792 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 BIRC7Q96CA5 298 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 MYO19Q96H55 970 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 FAM81BQ96LP2 452 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 MED15Q96RN5 788 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 RSPH9Q9H1X1 276 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-210ENST00000472880 MTG2Q9H4K7 406 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 PCOLCE2Q9UKZ9 415 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 INTS6Q9UL03 887 aaKnown RBP20.46■□□□□ 0.87
COL9A3-210ENST00000472880 SCML1Q9UN30 329 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 APOBEC2Q9Y235 224 aaKnown RBP20.46■□□□□ 0.87
COL9A3-210ENST00000472880 CEP83Q9Y592 693 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 ZFHX4Q86UP3 3567 aa20.46■□□□□ 0.87
COL9A3-210ENST00000472880 YWHAZP63104 245 aaKnown RBP20.45■□□□□ 0.86
COL9A3-210ENST00000472880 SFSWAPQ12872 951 aaKnown RBP20.45■□□□□ 0.86
COL9A3-210ENST00000472880 PDCLQ13371 301 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 ZC3H12AQ5D1E8 599 aaKnown RBP20.45■□□□□ 0.86
COL9A3-210ENST00000472880 RNF219Q5W0B1 726 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-210ENST00000472880 RAP1GAP2Q684P5 730 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 TRIM65Q6PJ69 517 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 MMS22LQ6ZRQ5 1243 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 USP30Q70CQ3 517 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 DHX40Q8IX18 779 aaKnown RBP20.45■□□□□ 0.86
COL9A3-210ENST00000472880 KDM1BQ8NB78 822 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 BTN2A3PQ96KV6 586 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 CRACR2AQ9BSW2 395 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 PABPC3Q9H361 631 aaKnown RBP20.45■□□□□ 0.86
COL9A3-210ENST00000472880 THAP9Q9H5L6 903 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 TM9SF3Q9HD45 589 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 OSGEPQ9NPF4 335 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 KIAA1522Q9P206 1035 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-210ENST00000472880 CYTH4Q9UIA0 394 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 XPO7Q9UIA9 1087 aaKnown RBP20.45■□□□□ 0.86
COL9A3-210ENST00000472880 SLCO1B1Q9Y6L6 691 aa20.45■□□□□ 0.86
COL9A3-210ENST00000472880 FLRT2O43155 660 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 CBFA2T3O75081 653 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 SIN3BO75182 1162 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 TRUB2O95900 331 aaKnown RBP20.44■□□□□ 0.86
COL9A3-210ENST00000472880 TACR2P21452 398 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 CD27P26842 260 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 USP8P40818 1118 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 GRIA4P48058 902 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 ARHGAP44Q17R89 818 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 FSCBQ5H9T9 825 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 GJB7Q6PEY0 223 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 TMEM110Q86TL2 294 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 ADAMTS14Q8WXS8 1223 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 MRGPRX3Q96LB0 322 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 FAM204AQ9H8W3 233 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 ACP6Q9NPH0 428 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 RWDD2AQ9UIY3 292 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 ERVW-1Q9UQF0 538 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 PCDHGB2Q9Y5G2 931 aa20.44■□□□□ 0.86
COL9A3-210ENST00000472880 IGF2RP11717 2491 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 FAM221BA6H8Z2 402 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 F5H5T6 163 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 SRPRAP08240 638 aaKnown RBP20.43■□□□□ 0.86
COL9A3-210ENST00000472880 NUMA1Q14980 2115 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 CST6Q15828 149 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 KIF19Q2TAC6 998 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 GBP6Q6ZN66 633 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 ADAT2Q7Z6V5 191 aaKnown RBP20.43■□□□□ 0.86
COL9A3-210ENST00000472880 GLRX5Q86SX6 157 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 PNPLA1Q8N8W4 532 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 ATP6V0D2Q8N8Y2 350 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 FBXL12Q9NXK8 326 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 APEX2Q9UBZ4 518 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 SLC12A6Q9UHW9 1150 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 ANKRD6Q9Y2G4 727 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 SNX11Q9Y5W9 270 aa20.43■□□□□ 0.86
COL9A3-210ENST00000472880 NYNRINQ9P2P1 1898 aaKnown RBP20.43■□□□□ 0.86
COL9A3-210ENST00000472880 EDDM13A0A1B0GTR0 161 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 FAM47DPA6NHR8 397 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 IGLV3-25P01717 112 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 CTSOP43234 321 aaPredicted RBP20.42■□□□□ 0.86
COL9A3-210ENST00000472880 ECT2LQ008S8 904 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 ARID5BQ14865 1188 aa20.42■□□□□ 0.86
COL9A3-210ENST00000472880 SUZ12Q15022 739 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms