RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SLC25A52Q3SY17 297 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 NCBP2-AS2Q69YL0 99 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 ALYREFQ86V81 257 aaKnown RBP14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 TTC39CQ8N584 583 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 DBF4BQ8NFT6 615 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 CFAP61Q8NHU2 1237 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 GIMAP7Q8NHV1 300 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 COLEC11Q9BWP8 271 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 CHST12Q9NRB3 414 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 GTF2IRD1Q9UHL9 959 aa14.11□□□□□ -0.15
CCDC88A-211ENST00000471947 SLC12A8A0AV02 714 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 PIRO00625 290 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 PRKCGP05129 697 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 ITGA9Q13797 1035 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 N4BP2L1Q5TBK1 243 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 PRR11Q96HE9 360 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 NCAPGQ9BPX3 1015 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 USP29Q9HBJ7 922 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 TRIM17Q9Y577 477 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 A0A1W2PQH9 124 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 TPP1O14773 563 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 APOEP02649 317 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 CDH5P33151 784 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 AQP5P55064 265 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 VWA5B1Q5TIE3 1220 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 RAP1GAP2Q684P5 730 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 PTAR1Q7Z6K3 402 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 FNIP1Q8TF40 1166 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 SENP6Q9GZR1 1112 aaPredicted RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 ANLNQ9NQW6 1124 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 ANKRD12Q6UB98 2062 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 SDR42E2A6NKP2 422 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 TBKBP1A7MCY6 615 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 XPO1O14980 1071 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 CDC42EP1Q00587 391 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 USP10Q14694 798 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 FASTKD1Q53R41 847 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 RFWD3Q6PCD5 774 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 CHSY1Q86X52 802 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 EFHBQ8N7U6 833 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 OR10T2Q8NGX3 314 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 FBXO32Q969P5 355 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 SMARCD1Q96GM5 515 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 NDNQ99608 321 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 WDR83Q9BRX9 315 aaKnown RBP14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 TLK1Q9UKI8 766 aa14.1□□□□□ -0.15
CCDC88A-211ENST00000471947 DOCK1Q14185 1865 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 A0A0U1RQS6 177 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 HAUS5O94927 633 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 LHX1P48742 406 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 SREBF2Q12772 1141 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 DUSP4Q13115 394 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 THOC5Q13769 683 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 ZNF280DQ6N043 979 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 PRSS55Q6UWB4 352 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 LONP2Q86WA8 852 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 SNX31Q8N9S9 440 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 E2F7Q96AV8 911 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 MARK4Q96L34 752 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 TMEM120AQ9BXJ8 343 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 SP110Q9HB58 689 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 CNTN3Q9P232 1028 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 SMG5Q9UPR3 1016 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 KRT16P08779 473 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 EZRP15311 586 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 SLC5A3P53794 718 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 TTC39BQ5VTQ0 682 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 C16orf59Q7L2K0 433 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 CAND1Q86VP6 1230 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 BLOC1S5Q8TDH9 187 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 DQX1Q8TE96 717 aaKnown RBP14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 SOCS4Q8WXH5 440 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 AUTS2Q8WXX7 1259 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 FCRL2Q96LA5 508 aaPredicted RBP14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 TASP1Q9H6P5 420 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 COL1A2P08123 1366 aa14.09□□□□□ -0.15
CCDC88A-211ENST00000471947 A0A0A0MRY4 1105 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 UBA6A0AVT1 1052 aaPredicted RBP14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 GYG2O15488 501 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 HSPA4LO95757 839 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 DAOAP59103 153 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 BST1Q10588 318 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 HABP4Q5JVS0 413 aaKnown RBP14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 RNF148Q8N7C7 305 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 CXorf38Q8TB03 319 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 HSFY1Q96LI6 401 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 SPATA13Q96N96 652 aa14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 SUDS3Q9H7L9 328 aaPredicted RBP14.08□□□□□ -0.15
CCDC88A-211ENST00000471947 ZFXP17010 805 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 SEMG2Q02383 582 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 PRPSAP1Q14558 356 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 C17orf99Q6UX52 265 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 PAQR9Q6ZVX9 377 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 SPATS2Q86XZ4 545 aaKnown RBP14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 CRLF3Q8IUI8 442 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 NPWQ8N729 165 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 NIPA2Q8N8Q9 360 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 DMAP1Q9NPF5 467 aaPredicted RBP14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 PLK2Q9NYY3 685 aa14.08□□□□□ -0.16
CCDC88A-211ENST00000471947 FER1L6Q2WGJ9 1857 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms