RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 RUBCNQ92622 972 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 SCAMP4Q969E2 229 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 NSUN4Q96CB9 384 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 RRP36Q96EU6 259 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 RBM14Q96PK6 669 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 DDX23Q9BUQ8 820 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 TEX13AQ9BXU3 409 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 NUP62CLQ9H1M0 184 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 OR10A4Q9H209 315 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC177Q9NQR7 707 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 RXFP3Q9NSD7 469 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 HAUS2Q9NVX0 235 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 ETAA1Q9NY74 926 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 EHD3Q9NZN3 535 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 FLRT1Q9NZU1 646 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 SH3BP4Q9P0V3 963 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 SERGEFQ9UGK8 458 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 KIF3AQ9Y496 699 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 RNF123Q5XPI4 1314 aa5.18□□□□□ -1.58
CCDC88A-210ENST00000468534 BRD4O60885 1362 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 GPR75-ASB3A0A0A6YYF3 556 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 TXNL1O43396 289 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 STX6O43752 255 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 TSC22D2O75157 780 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 RTN2O75298 545 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 SOAT2O75908 522 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 PAHP00439 452 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 PDHA1P08559 390 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 NDUFB7P17568 137 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 ITGALP20701 1170 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 MPGP29372 298 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 CD6P30203 668 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 MSH2P43246 934 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 RBM5P52756 815 aaKnown RBP eCLIP5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 IFI35P80217 286 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 GBE1Q04446 702 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 GALNT1Q10472 559 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 ERV3-1Q14264 604 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 PPP1R7Q15435 360 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 CEP55Q53EZ4 464 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 PLAC9Q5JTB6 97 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 APOA5Q6Q788 366 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 ANGPTL8Q6UXH0 198 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF783Q6ZMS7 281 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 MTERF4Q7Z6M4 381 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 TTC7BQ86TV6 843 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 SPATA2LQ8IUW3 424 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 CEP97Q8IW35 865 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 PRR18Q8N4B5 295 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF527Q8NB42 609 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 HTRA1Q92743 480 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 C16orf45Q96MC5 204 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 YME1L1Q96TA2 773 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 CNPPD1Q9BV87 410 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 C1orf43Q9BWL3 253 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 AMBRA1Q9C0C7 1298 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 NT5C3AQ9H0P0 336 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 MROH8Q9H579 483 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 CFAP97Q9P2B7 532 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 EXTL2Q9UBQ6 330 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 MOSPD1Q9UJG1 213 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 L1RE1Q9UN81 338 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 AGAP1Q9UPQ3 857 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 PCDHGB2Q9Y5G2 931 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 SPATA31A3Q5VYP0 1347 aa5.17□□□□□ -1.58
CCDC88A-210ENST00000468534 CYP2D7A0A087X1C5 515 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 ARPC4-TTLL3A0A0A6YYG9 625 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 TARM1B6A8C7 271 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 H3BML4 177 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 SMIM22K7EJ46 135 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 UBXN8O00124 270 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 KPNA5O15131 536 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 TP73O15350 636 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 OPN1MWP04001 364 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 OPN1MW2P0DN77 364 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 OPN1MW3P0DN78 364 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 CYP2A6P11509 494 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 PORP16435 677 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 GAP43P17677 238 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 MAPK3P27361 379 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 PSMC4P43686 418 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 SULT1E1P49888 294 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 ARFIP1P53367 373 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 SGCGQ13326 291 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 SLC14A1Q13336 389 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 BMPR2Q13873 1038 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 SYCP1Q15431 976 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 SMAD1Q15797 465 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 FAM110CQ1W6H9 321 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 FBXO47Q5MNV8 452 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC183Q5T5S1 534 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 RNF220Q5VTB9 566 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 AP1ARQ63HQ0 302 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 C11orf88Q6PI97 169 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 LPCAT2Q7L5N7 544 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 PDSS2Q86YH6 399 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 LRRC49Q8IUZ0 686 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 CPOQ8IVL8 374 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 AFAP1Q8N556 730 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 TSPYL6Q8N831 410 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms