RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 TSHRP16473 764 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 MSH2P43246 934 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 MAGEA3P43357 314 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 BRMS1LQ5PSV4 323 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 C6orf89Q6UWU4 347 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 RNF19BQ6ZMZ0 732 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 LRRC43Q8N309 656 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 DIS3LQ8TF46 1054 aaKnown RBP18.78■□□□□ 0.6
COL9A3-205ENST00000466192 CKAP2Q8WWK9 683 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 CYTH2Q99418 400 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 PAIP2Q9BPZ3 127 aaKnown RBP18.78■□□□□ 0.6
COL9A3-205ENST00000466192 DHRS4Q9BTZ2 278 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 FBXO44Q9H4M3 255 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 GGA2Q9UJY4 613 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 RAD54BQ9Y620 910 aa18.78■□□□□ 0.6
COL9A3-205ENST00000466192 KCNK1O00180 336 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 OPHN1O60890 802 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 PAGE1O75459 146 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 STK10O94804 968 aaKnown RBP18.77■□□□□ 0.6
COL9A3-205ENST00000466192 SRGAP2BP0DMP2 458 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 CCR1P32246 355 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 GRIA1P42261 906 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 ELAVL2Q12926 359 aaKnown RBP18.77■□□□□ 0.6
COL9A3-205ENST00000466192 GPR17Q13304 367 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 KBTBD12Q3ZCT8 623 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 ZNF567Q8N184 647 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 DCAKDQ8WVC6 231 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 VWCEQ96DN2 955 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 HAPLN3Q96S86 360 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 ELAC2Q9BQ52 826 aaKnown RBP18.77■□□□□ 0.6
COL9A3-205ENST00000466192 IL37Q9NZH6 218 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 SENP1Q9P0U3 644 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 GMIPQ9P107 970 aa18.77■□□□□ 0.6
COL9A3-205ENST00000466192 KRT4P19013 534 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 FDFT1P37268 417 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 PPIDQ08752 370 aaKnown RBP18.76■□□□□ 0.59
COL9A3-205ENST00000466192 ARTNQ5T4W7 220 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 RNF187Q5TA31 235 aaPredicted RBP18.76■□□□□ 0.59
COL9A3-205ENST00000466192 PRSS55Q6UWB4 352 aaPredicted RBP18.76■□□□□ 0.59
COL9A3-205ENST00000466192 FERMT1Q9BQL6 677 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 FGFR1OP2Q9NVK5 253 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 ZC3H7BQ9UGR2 993 aaKnown RBP18.76■□□□□ 0.59
COL9A3-205ENST00000466192 COL4A6Q14031 1691 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 DOCK4Q8N1I0 1966 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 WDR4P57081 412 aaKnown RBP18.76■□□□□ 0.59
COL9A3-205ENST00000466192 PPP2R5DQ14738 602 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 NUGGCQ68CJ6 796 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 OTUD6BQ8N6M0 293 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 DEPDC1BQ8WUY9 529 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 TTPALQ9BTX7 342 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 PLAC1Q9HBJ0 212 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 SAMD15Q9P1V8 674 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 TBX21Q9UL17 535 aa18.76■□□□□ 0.59
COL9A3-205ENST00000466192 ATXN2Q99700 1313 aaKnown RBP18.76■□□□□ 0.59
COL9A3-205ENST00000466192 FAM92AA1XBS5 289 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 NCAM2O15394 837 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 PRPF4O43172 522 aaKnown RBP eCLIP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 PSMB4P28070 264 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 RPA3P35244 121 aaPredicted RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 GALNT2Q10471 571 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 RWDD4Q6NW29 188 aaKnown RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 ANKS3Q6ZW76 656 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 PIGWQ7Z7B1 504 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 SPPL2BQ8TCT7 592 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 HDAC11Q96DB2 347 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 SGSM3Q96HU1 749 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 SIGLEC10Q96LC7 697 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 TGS1Q96RS0 853 aaKnown RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 NSRP1Q9H0G5 558 aaKnown RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 KCNU1A8MYU2 1149 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 H7C4K7 107 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 SPAG6O75602 509 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 CA4P22748 312 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 PTPN3P26045 913 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 SERPINB6P35237 376 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 MGAT5BQ3V5L5 792 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 MANEALQ5VSG8 457 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 MSANTD2Q6P1R3 559 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 PRPF39Q86UA1 669 aaKnown RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 MPP5Q8N3R9 675 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 PDCD7Q8N8D1 485 aaKnown RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 CCDC197Q8NCU1 140 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 FCRL2Q96LA5 508 aaPredicted RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 MAGEB18Q96M61 343 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 SERPINB11Q96P15 392 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 SEPT5Q99719 369 aaPredicted RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 TRIM56Q9BRZ2 755 aaKnown RBP18.75■□□□□ 0.59
COL9A3-205ENST00000466192 ATP11BQ9Y2G3 1177 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 MAD1L1Q9Y6D9 718 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 IKBKGQ9Y6K9 419 aa18.75■□□□□ 0.59
COL9A3-205ENST00000466192 LTBP2Q14767 1821 aa18.74■□□□□ 0.59
COL9A3-205ENST00000466192 NYNRINQ9P2P1 1898 aaKnown RBP18.74■□□□□ 0.59
COL9A3-205ENST00000466192 EFEMP2O95967 443 aa18.74■□□□□ 0.59
COL9A3-205ENST00000466192 YWHAQP27348 245 aa18.74■□□□□ 0.59
COL9A3-205ENST00000466192 GARSP41250 739 aaKnown RBP18.74■□□□□ 0.59
COL9A3-205ENST00000466192 IL9RQ01113 521 aa18.74■□□□□ 0.59
COL9A3-205ENST00000466192 DUSP4Q13115 394 aa18.74■□□□□ 0.59
COL9A3-205ENST00000466192 IKBKEQ14164 716 aa18.74■□□□□ 0.59
COL9A3-205ENST00000466192 ZKSCAN8Q15776 578 aaPredicted RBP18.74■□□□□ 0.59
COL9A3-205ENST00000466192 PARP6Q2NL67 630 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms