RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 TMEFF1Q8IYR6 380 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 NETO1Q8TDF5 533 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 WDCPQ9H6R7 721 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 RTN4Q9NQC3 1192 aaKnown RBP23.77■■□□□ 1.4
PTPN4-208ENST00000460289 RALGAPA1Q6GYQ0 2036 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 ABCA7Q8IZY2 2146 aa23.77■■□□□ 1.4
PTPN4-208ENST00000460289 DMXL1Q9Y485 3027 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 GOLGA8SH3BPF8 625 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 ASLP04424 464 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 MMP8P22894 467 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 DPP6P42658 865 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 CXCR3P49682 368 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 SULT1E1P49888 294 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 RPL6Q02878 288 aaKnown RBP23.76■■□□□ 1.39
PTPN4-208ENST00000460289 PTPRNQ16849 979 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 AASDHQ4L235 1098 aaPredicted RBP23.76■■□□□ 1.39
PTPN4-208ENST00000460289 C2CD6Q53TS8 623 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 BRMS1LQ5PSV4 323 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 PRCCQ92733 491 aaPredicted RBP23.76■■□□□ 1.39
PTPN4-208ENST00000460289 FUCA2Q9BTY2 467 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 MKRN2Q9H000 416 aaKnown RBP23.76■■□□□ 1.39
PTPN4-208ENST00000460289 SLC6A17Q9H1V8 727 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 SUN2Q9UH99 717 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 CYP8B1Q9UNU6 501 aa23.76■■□□□ 1.39
PTPN4-208ENST00000460289 IGHV1OR15-9A0A0B4J2B8 117 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 LOC105378220A0A1B0GUY1 285 aaPredicted RBP23.75■■□□□ 1.39
PTPN4-208ENST00000460289 OXCT1P55809 520 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 ST8SIA6P61647 398 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 DEUP1Q05D60 604 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 CAMK2GQ13555 558 aaPredicted RBP23.75■■□□□ 1.39
PTPN4-208ENST00000460289 SLC12A1Q13621 1099 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 AUHQ13825 339 aaKnown RBP23.75■■□□□ 1.39
PTPN4-208ENST00000460289 SF3A2Q15428 464 aaKnown RBP23.75■■□□□ 1.39
PTPN4-208ENST00000460289 FSCBQ5H9T9 825 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 ACBD5Q5T8D3 534 aaPredicted RBP23.75■■□□□ 1.39
PTPN4-208ENST00000460289 FBXL22Q6P050 247 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 ERMP1Q7Z2K6 904 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 SIPA1Q96FS4 1042 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 RPRD1AQ96P16 312 aaPredicted RBP23.75■■□□□ 1.39
PTPN4-208ENST00000460289 ITM2CQ9NQX7 267 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 PIGVQ9NUD9 493 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 TMEM59LQ9UK28 342 aa23.75■■□□□ 1.39
PTPN4-208ENST00000460289 THADAQ6YHU6 1953 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 A0A1B0GVM2 712 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 FAM170AA1A519 330 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 SYCE3A1L190 88 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 TCAF2A6NFQ2 919 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 TEX33O43247 280 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 NDUFS2O75306 463 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 PAGE1O75459 146 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 ACADMP11310 421 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 UNGP13051 313 aaPredicted RBP23.74■■□□□ 1.39
PTPN4-208ENST00000460289 HLA-EP13747 358 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 CSKP41240 450 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 NSFP46459 744 aaKnown RBP23.74■■□□□ 1.39
PTPN4-208ENST00000460289 PITRM1Q5JRX3 1037 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 LYSMD4Q5XG99 296 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 MMS22LQ6ZRQ5 1243 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 CCAR2Q8N163 923 aaKnown RBP23.74■■□□□ 1.39
PTPN4-208ENST00000460289 KDM1BQ8NB78 822 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 OR2T3Q8NH03 318 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 PIGKQ92643 395 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 PPP1R9BQ96SB3 815 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 TBCBQ99426 244 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 RTKNQ9BST9 563 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 TKTL2Q9H0I9 626 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 FBRSQ9HAH7 460 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 ARHGEF38Q9NXL2 777 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 INTS6Q9UL03 887 aaKnown RBP23.74■■□□□ 1.39
PTPN4-208ENST00000460289 HS3ST4Q9Y661 456 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 CEP250Q9BV73 2442 aa23.74■■□□□ 1.39
PTPN4-208ENST00000460289 FERP16591 822 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 FLT3P36888 993 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 PTGER3P43115 390 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 COPAP53621 1224 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 TPM4P67936 248 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 OTUD1Q5VV17 481 aaPredicted RBP23.73■■□□□ 1.39
PTPN4-208ENST00000460289 DGLUCYQ7Z3D6 616 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 SLC30A5Q8TAD4 765 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 PCDHB18PQ96TA0 734 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 SIK2Q9H0K1 926 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 SMOC1Q9H4F8 434 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 USP36Q9P275 1121 aaKnown RBP23.73■■□□□ 1.39
PTPN4-208ENST00000460289 VANGL2Q9ULK5 521 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 MYO6Q9UM54 1294 aa23.73■■□□□ 1.39
PTPN4-208ENST00000460289 PLXND1Q9Y4D7 1925 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 KHNYNO15037 678 aaKnown RBP23.72■■□□□ 1.39
PTPN4-208ENST00000460289 GDF9O60383 454 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 ADCY5O95622 1261 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 SRPRAP08240 638 aaKnown RBP23.72■■□□□ 1.39
PTPN4-208ENST00000460289 TFE3P19532 575 aaPredicted RBP23.72■■□□□ 1.39
PTPN4-208ENST00000460289 CD6P30203 668 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 OXTRP30559 389 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 ATXN1P54253 815 aaKnown RBP23.72■■□□□ 1.39
PTPN4-208ENST00000460289 FOXK2Q01167 660 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 CENPCQ03188 943 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 IQCB1Q15051 598 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 PLEKHG6Q3KR16 790 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 ARMCX6Q7L4S7 300 aa23.72■■□□□ 1.39
PTPN4-208ENST00000460289 SYT12Q8IV01 421 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms