RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 TRIM4Q9C037 500 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 UBE2OQ9C0C9 1292 aaKnown RBP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 C15orf41Q9Y2V0 281 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 SNX24Q9Y343 169 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 ASB3Q9Y575 518 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 HEY1Q9Y5J3 304 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 EEF2KO00418 725 aaKnown RBP8.34□□□□□ -1.08
CCDC39-201ENST00000442201 MSI1O43347 362 aaKnown RBP8.34□□□□□ -1.08
CCDC39-201ENST00000442201 CXCL14O95715 111 aa8.34□□□□□ -1.08
CCDC39-201ENST00000442201 CNPP09543 421 aaKnown RBP8.34□□□□□ -1.08
CCDC39-201ENST00000442201 RBP3P10745 1247 aa8.34□□□□□ -1.08
CCDC39-201ENST00000442201 TRPC1P48995 793 aa8.34□□□□□ -1.08
CCDC39-201ENST00000442201 PTK6Q13882 451 aa8.34□□□□□ -1.08
CCDC39-201ENST00000442201 PPP2R5DQ14738 602 aa8.34□□□□□ -1.08
CCDC39-201ENST00000442201 C1orf228Q6PIY5 440 aa8.34□□□□□ -1.08
CCDC39-201ENST00000442201 AENQ8WTP8 325 aaKnown RBP8.34□□□□□ -1.08
CCDC39-201ENST00000442201 ZNF512Q96ME7 567 aaPredicted RBP8.34□□□□□ -1.08
CCDC39-201ENST00000442201 ANLNQ9NQW6 1124 aa8.34□□□□□ -1.08
CCDC39-201ENST00000442201 LZTS1Q9Y250 596 aa8.34□□□□□ -1.08
CCDC39-201ENST00000442201 PTPRDP23468 1912 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.33□□□□□ -1.08
CCDC39-201ENST00000442201 I6L893 689 aaPredicted RBP8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ZDHHC11BP0C7U3 371 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 SLC2A3P11169 496 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 AMPD1P23109 780 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 EFEMP1Q12805 493 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 CALCOCO2Q13137 446 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 C10orf120Q5SQS8 335 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 EMC10Q5UCC4 262 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 NPNTQ6UXI9 565 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ALLCQ8N6M5 410 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 CCHCR1Q8TD31 782 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 OVCA2Q8WZ82 227 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 TMEM121Q9BTD3 319 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ARHGEF4Q9NR80 690 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 OR12D3Q9UGF7 316 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 NR2E3Q9Y5X4 410 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 LINC01553A4QN01 128 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 GOLGA6L10A6NI86 522 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 H7C0C1 242 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 SGK1O00141 431 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 TLR5O60602 858 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 KRT14P02533 472 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ADH1AP07327 375 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 RPL21P46778 160 aaKnown RBP8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ATP5OP48047 213 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 HCAR3P49019 387 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 NR2C2P49116 596 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 TPI1P60174 286 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 SEMA3BQ13214 749 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 NNTQ13423 1086 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 TRIP13Q15645 432 aaPredicted RBP8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ACCSLQ4AC99 568 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 RFX8Q6ZV50 586 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 NSMCE1Q8WV22 266 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 RSAD2Q8WXG1 361 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 MYRFLQ96LU7 910 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 HAPLN3Q96S86 360 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 CDK5RAP1Q96SZ6 601 aaKnown RBP8.33□□□□□ -1.08
CCDC39-201ENST00000442201 TCF25Q9BQ70 676 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 YIPF3Q9GZM5 350 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 OSBPL2Q9H1P3 480 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ALG13Q9NP73 1137 aaKnown RBP8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ENTPD7Q9NQZ7 604 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 ARHGEF38Q9NXL2 777 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 MARCH2Q9P0N8 246 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 TLR6Q9Y2C9 796 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 INSL5Q9Y5Q6 135 aa8.33□□□□□ -1.08
CCDC39-201ENST00000442201 FAM72CH0Y354 149 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 IFNB1P01574 187 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 HMGA1P17096 107 aaKnown RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ADCY8P40145 1251 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 VPS41P49754 854 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 SCNN1BP51168 640 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 EPHB3P54753 998 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 PLTPP55058 493 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 TBX4P57082 545 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 TWF1Q12792 350 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 RIPK1Q13546 671 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 FAM72AQ5TYM5 149 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 FAM72DQ6L9T8 149 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 DARS2Q6PI48 645 aaKnown RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ZC3H18Q86VM9 953 aaKnown RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 FAM72BQ86X60 149 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 GDAP1L1Q96MZ0 367 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 TSC22D3Q99576 134 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 EMILIN2Q9BXX0 1053 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 SIK2Q9H0K1 926 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 TRPM5Q9NZQ8 1165 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 NEU2Q9Y3R4 380 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 IRAK3Q9Y616 596 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ALPK3Q96L96 1907 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 GOLGA6L7A0A1B0GV03 622 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 AGPSO00116 658 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 TBX18O95935 607 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 APOEP02649 317 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ITIH2P19823 946 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ECHS1P30084 290 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 STIP1P31948 543 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms