RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 MTMR10Q9NXD2 777 aa6.15□□□□□ -1.42
HMGB3-202ENST00000419110 CWC15Q9P013 229 aaKnown RBP6.15□□□□□ -1.42
HMGB3-202ENST00000419110 CALCOCO1Q9P1Z2 691 aa6.15□□□□□ -1.42
HMGB3-202ENST00000419110 WHRNQ9P202 907 aa6.15□□□□□ -1.42
HMGB3-202ENST00000419110 SFMBT1Q9UHJ3 866 aa6.15□□□□□ -1.42
HMGB3-202ENST00000419110 LSM7Q9UK45 103 aaKnown RBP6.15□□□□□ -1.42
HMGB3-202ENST00000419110 NFU1Q9UMS0 254 aa6.15□□□□□ -1.42
HMGB3-202ENST00000419110 MYO7AQ13402 2215 aa6.15□□□□□ -1.43
HMGB3-202ENST00000419110 MKI67P46013 3256 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 TRAV19A0A0A6YYK7 116 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 BCLAF3A2AJT9 711 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ZNF840PA6NDX5 716 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 C2orf71A6NGG8 1288 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 E9PAM4 449 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DNALI1O14645 258 aaPredicted RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DCLK1O15075 740 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 KCNN4O15554 427 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 MTSS1O43312 755 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 OPHN1O60890 802 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 LILRB3O75022 631 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 NEBLO76041 1014 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 LATS1O95835 1130 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 S1PR4O95977 384 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 OAS1P00973 400 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 IGLV3-27P01718 113 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 HMBSP08397 361 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 POU2F2P09086 479 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 HNRNPA1P09651 372 aaKnown RBP eCLIP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 SRGAP2BP0DMP2 458 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 MYBL2P10244 700 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 IRF1P10914 325 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 MBL2P11226 248 aaPredicted RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 HMGA1P17096 107 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 PFKLP17858 780 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DDX6P26196 483 aaKnown RBP eCLIP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 GABRR2P28476 465 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ATP5C1P36542 298 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ADCY8P40145 1251 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 RPL21P46778 160 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 CARSP49589 748 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DRG2P55039 364 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ERVK-21P61565 698 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 BASP1P80723 227 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 GBE1Q04446 702 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ADCY2Q08462 1091 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 GPS1Q13098 491 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 GPM6BQ13491 265 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 MORF4L2Q15014 288 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 PAFAH1B3Q15102 231 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 PRKD1Q15139 912 aaPredicted RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 P3H1Q32P28 736 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 PABPC1LQ4VXU2 614 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ARHGAP15Q53QZ3 475 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 RABGAP1LQ5R372 815 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 MANEALQ5VSG8 457 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 TTC39BQ5VTQ0 682 aaPredicted RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 SNX30Q5VWJ9 437 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 NPNTQ6UXI9 565 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 C4orf22Q6V702 233 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 PPP1R21Q6ZMI0 780 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ARHGEF18Q6ZSZ5 1173 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 HDXQ7Z353 690 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 PCGF5Q86SE9 256 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ZC3H18Q86VM9 953 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 HOOK3Q86VS8 718 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DDX42Q86XP3 938 aaKnown RBP eCLIP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ZDHHC14Q8IZN3 488 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 LZTR1Q8N653 840 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 GOLGA6L1Q8N7Z2 621 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 RTL3Q8N8U3 475 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 MICAL1Q8TDZ2 1067 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 HDAC11Q96DB2 347 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 RTP4Q96DX8 246 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 SLC39A13Q96H72 371 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 TMEM121Q9BTD3 319 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 FOXP3Q9BZS1 431 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 PHACTR1Q9C0D0 580 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ZYG11BQ9C0D3 744 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 BRD8Q9H0E9 1235 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 SIK2Q9H0K1 926 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 TMPRSS4Q9NRS4 437 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DZANK1Q9NVP4 752 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 HAUS2Q9NVX0 235 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 OSER1Q9NX31 292 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DTLQ9NZJ0 730 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 PAK5Q9P286 719 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 OR12D3Q9UGF7 316 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ZMYM5Q9UJ78 669 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 NUDT5Q9UKK9 219 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DRG1Q9Y295 367 aaKnown RBP6.14□□□□□ -1.43
HMGB3-202ENST00000419110 SNX24Q9Y343 169 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 HS3ST4Q9Y661 456 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 DOCK8Q8NF50 2099 aa6.14□□□□□ -1.43
HMGB3-202ENST00000419110 ZNF106Q9H2Y7 1883 aaKnown RBP6.13□□□□□ -1.43
HMGB3-202ENST00000419110 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.13□□□□□ -1.43
HMGB3-202ENST00000419110 A0A0A0MRY4 1105 aa6.13□□□□□ -1.43
HMGB3-202ENST00000419110 GOLGA6CA6NDK9 693 aa6.13□□□□□ -1.43
HMGB3-202ENST00000419110 GOLGA6BA6NDN3 693 aa6.13□□□□□ -1.43
HMGB3-202ENST00000419110 HIDE1A8MVS5 230 aa6.13□□□□□ -1.43
HMGB3-202ENST00000419110 KCNU1A8MYU2 1149 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms