RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 APCDD1Q8J025 514 aa12□□□□□ -0.49
USP4-204ENST00000416417 HJURPQ8NCD3 748 aaPredicted RBP12□□□□□ -0.49
USP4-204ENST00000416417 FIBINQ8TAL6 211 aa12□□□□□ -0.49
USP4-204ENST00000416417 RPL10LQ96L21 214 aaKnown RBP12□□□□□ -0.49
USP4-204ENST00000416417 MRGPRX3Q96LB0 322 aa12□□□□□ -0.49
USP4-204ENST00000416417 ZDHHC5Q9C0B5 715 aa12□□□□□ -0.49
USP4-204ENST00000416417 BTBD1Q9H0C5 482 aa12□□□□□ -0.49
USP4-204ENST00000416417 COX16Q9P0S2 106 aa12□□□□□ -0.49
USP4-204ENST00000416417 NUMA1Q14980 2115 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 TAF4O00268 1085 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 MID1O15344 667 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 P4HA2O15460 535 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 IRAK2O43187 625 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 THAP12O43422 761 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 CER1O95813 267 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 ATXN1LP0C7T5 689 aaKnown RBP11.99□□□□□ -0.49
USP4-204ENST00000416417 HOXB3P14651 431 aaPredicted RBP11.99□□□□□ -0.49
USP4-204ENST00000416417 USP8P40818 1118 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 STK19P49842 368 aaPredicted RBP11.99□□□□□ -0.49
USP4-204ENST00000416417 GCNT1Q02742 428 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 RING1Q06587 406 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 PAK1Q13153 545 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 E2F5Q15329 346 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 STILQ15468 1287 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 ZNF423Q2M1K9 1284 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 CCDC157Q569K6 752 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 ZNF776Q68DI1 518 aaPredicted RBP11.99□□□□□ -0.49
USP4-204ENST00000416417 CHSY1Q86X52 802 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 PASD1Q8IV76 773 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 MMAAQ8IVH4 418 aaKnown RBP11.99□□□□□ -0.49
USP4-204ENST00000416417 RHBDD1Q8TEB9 315 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 TTC17Q96AE7 1141 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 SLC39A13Q96H72 371 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 SERPINB11Q96P15 392 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 SUN2Q9UH99 717 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 SLCO3A1Q9UIG8 710 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 ERVW-1Q9UQF0 538 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 TLR6Q9Y2C9 796 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 ANKRD6Q9Y2G4 727 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 NFE2L3Q9Y4A8 694 aa11.99□□□□□ -0.49
USP4-204ENST00000416417 PCNX2A6NKB5 2137 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 A0A1W2PP55 124 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 BICDL2A1A5D9 508 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 H0Y626 953 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 H0Y8X5 98 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 PLK4O00444 970 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 CAPN9O14815 690 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 GRAP2O75791 330 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 TRIM16O95361 564 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 IGHV4-34P06331 123 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 VAV1P15498 845 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 SLC9A1P19634 815 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 TACR2P21452 398 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 RDXP35241 583 aaKnown RBP11.98□□□□□ -0.49
USP4-204ENST00000416417 GGCXP38435 758 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 AFF3P51826 1226 aaKnown RBP11.98□□□□□ -0.49
USP4-204ENST00000416417 METAP1P53582 386 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 ST8SIA6P61647 398 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 SCAPQ12770 1279 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 CDH18Q13634 790 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 CAMK4Q16566 473 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 MPP7Q5T2T1 576 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 ZNF606Q8WXB4 792 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 ORAI3Q9BRQ5 295 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 SLC4A5Q9BY07 1137 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 RSPH9Q9H1X1 276 aaPredicted RBP11.98□□□□□ -0.49
USP4-204ENST00000416417 NEUROG2Q9H2A3 272 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 PABPC3Q9H361 631 aaKnown RBP11.98□□□□□ -0.49
USP4-204ENST00000416417 EBF2Q9HAK2 575 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 FBXL12Q9NXK8 326 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 AJAP1Q9UKB5 411 aaPredicted RBP11.98□□□□□ -0.49
USP4-204ENST00000416417 CNTN6Q9UQ52 1028 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 CEP83Q9Y592 693 aa11.98□□□□□ -0.49
USP4-204ENST00000416417 DMXL2Q8TDJ6 3036 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 TMEM8BA6NDV4 472 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 BECN2A8MW95 431 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 WNT9AO14904 365 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 RNASEH2AO75792 299 aaKnown RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 LUC7L3O95232 432 aaKnown RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 TRUB2O95900 331 aaKnown RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 PNMA6AP0CW24 399 aaPredicted RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 GNA15P30679 374 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 PPP1R2P41236 205 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 PSMD8P48556 350 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 RPL34P49207 117 aaKnown RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 HNRNPDQ14103 355 aaKnown RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 HNRNPA1L2Q32P51 320 aaKnown RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 TTC31Q49AM3 519 aaPredicted RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 C9orf64Q5T6V5 341 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 KIAA0895LQ68EN5 471 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 NCEH1Q6PIU2 408 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 ELOA2Q8IYF1 753 aaPredicted RBP11.97□□□□□ -0.49
USP4-204ENST00000416417 STK40Q8N2I9 435 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 ADAMTS14Q8WXS8 1223 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 AZIN2Q96A70 460 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 SLC6A18Q96N87 628 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 MED15Q96RN5 788 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 TOR4AQ9NXH8 423 aa11.97□□□□□ -0.49
USP4-204ENST00000416417 TYW5A2RUC4 315 aaKnown RBP11.96□□□□□ -0.49
USP4-204ENST00000416417 APOEP02649 317 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms