RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 ATP5BP06576 529 aaKnown RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 EPHX1P07099 455 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 FERP16591 822 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 GGCXP38435 758 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 CXCR3P49682 368 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 ATXN1P54253 815 aaKnown RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 DEUP1Q05D60 604 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 AUHQ13825 339 aaKnown RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 BYSLQ13895 437 aaKnown RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 NR1I3Q14994 352 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 CSRP2Q16527 193 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 PTPRNQ16849 979 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 CLEC16AQ2KHT3 1053 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 SKOR2Q2VWA4 1001 aaPredicted RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 FBXL22Q6P050 247 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 KIAA1324Q6UXG2 1013 aaKnown RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 SND1Q7KZF4 910 aaKnown RBP eCLIP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 C11orf74Q86VG3 221 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 CIR1Q86X95 450 aaPredicted RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 EMC1Q8N766 993 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 ZNF366Q8N895 744 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 BAP1Q92560 729 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 PGAP3Q96FM1 320 aaPredicted RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 CFAP57Q96MR6 1250 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 TKTL2Q9H0I9 626 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 WDCPQ9H6R7 721 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 ANLNQ9NQW6 1124 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 INTS6Q9UL03 887 aaKnown RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 VANGL2Q9ULK5 521 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 HS3ST4Q9Y661 456 aa15.31■□□□□ 0.04
LIMS4-201ENST00000413601 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.31■□□□□ 0.04
LIMS4-201ENST00000413601 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 A0A1W2PQC6 194 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 LRRC53A6NM62 1247 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 I6L893 689 aaPredicted RBP15.3■□□□□ 0.04
LIMS4-201ENST00000413601 GJB6O95452 261 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 F9P00740 461 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 DLDP09622 509 aaKnown RBP15.3■□□□□ 0.04
LIMS4-201ENST00000413601 CCDC172P0C7W6 258 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 CSKP41240 450 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 NSFP46459 744 aaKnown RBP15.3■□□□□ 0.04
LIMS4-201ENST00000413601 DHPSP49366 369 aaPredicted RBP15.3■□□□□ 0.04
LIMS4-201ENST00000413601 IRAK1P51617 712 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 TPM4P67936 248 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 CREB5Q02930 508 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 CENPCQ03188 943 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 PTP4A2Q12974 167 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 MTA1Q13330 715 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 BRMS1LQ5PSV4 323 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 RABGAP1LQ5R372 815 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 ARCQ7LC44 396 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 IRF2BP2Q7Z5L9 587 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 C14orf80Q86SX3 495 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 TMEFF1Q8IYR6 380 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 CCAR2Q8N163 923 aaKnown RBP15.3■□□□□ 0.04
LIMS4-201ENST00000413601 IGSF8Q969P0 613 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 TTC17Q96AE7 1141 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 RPRD1AQ96P16 312 aaPredicted RBP15.3■□□□□ 0.04
LIMS4-201ENST00000413601 MKRN2Q9H000 416 aaKnown RBP15.3■□□□□ 0.04
LIMS4-201ENST00000413601 TMEM245Q9H330 911 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 SMOC1Q9H4F8 434 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 PRDM16Q9HAZ2 1276 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 CD93Q9NPY3 652 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 TMPRSS4Q9NRS4 437 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 ARHGEF38Q9NXL2 777 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 ADAM22Q9P0K1 906 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 KIAA1522Q9P206 1035 aaPredicted RBP15.3■□□□□ 0.04
LIMS4-201ENST00000413601 ADAMTS9Q9P2N4 1935 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 MYO6Q9UM54 1294 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 CYP8B1Q9UNU6 501 aa15.3■□□□□ 0.04
LIMS4-201ENST00000413601 PI4KAP42356 2102 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 MPLP40238 635 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 NUMBP49757 651 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 ATP11AP98196 1134 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 FANCCQ00597 558 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 SF3A2Q15428 464 aaKnown RBP15.29■□□□□ 0.04
LIMS4-201ENST00000413601 PITRM1Q5JRX3 1037 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 PRR23CQ6ZRP0 262 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 PHF13Q86YI8 300 aaPredicted RBP15.29■□□□□ 0.04
LIMS4-201ENST00000413601 TMPRSS6Q8IU80 811 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 APCDD1Q8J025 514 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 DEFB119Q8N690 84 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 JOSD2Q8TAC2 188 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 PCDHGA5Q9Y5G8 931 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 SNX10Q9Y5X0 201 aa15.29■□□□□ 0.04
LIMS4-201ENST00000413601 IGHV1OR15-9A0A0B4J2B8 117 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 A0A1B0GVM2 712 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 BCLAF3A2AJT9 711 aaKnown RBP15.28■□□□□ 0.04
LIMS4-201ENST00000413601 TCAF2A6NFQ2 919 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 GOLGA6L19H0YKK7 550 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 ZNF217O75362 1048 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 MOCS3O95396 460 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 CAVIN2O95810 425 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 CALB1P05937 261 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 ZNF806P0C7X5 589 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 PDGFRAP16234 1089 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 CTSOP43234 321 aaPredicted RBP15.28■□□□□ 0.04
LIMS4-201ENST00000413601 ID4P47928 161 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 COPAP53621 1224 aa15.28■□□□□ 0.04
LIMS4-201ENST00000413601 RPL6Q02878 288 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms