RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NCANO14594 1321 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 FAM205AQ6ZU69 1335 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PLK4O00444 970 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 TRIM38O00635 465 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 CYP1A2P05177 515 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 COL6A2P12110 1019 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NFKB1P19838 968 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PRDX6P30041 224 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 RPL14P50914 215 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 IL5RAQ01344 420 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 TBX2Q13207 712 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 GIT2Q14161 759 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SHROOM1Q2M3G4 852 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 TBC1D10BQ4KMP7 808 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MTX3Q5HYI7 312 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 HECTD3Q5T447 861 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ZNF618Q5T7W0 954 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MARC1Q5VT66 337 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 R3HCC1LQ7Z5L2 792 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MTDHQ86UE4 582 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 DNAJB8Q8NHS0 232 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SNIP1Q8TAD8 396 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 PROX1Q92786 737 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 FAXDC2Q96IV6 333 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 TEFMQ96QE5 360 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 NUDT12Q9BQG2 462 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 APOL5Q9BWW9 433 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 OXCT2Q9BYC2 517 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ELOVL4Q9GZR5 314 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 LRMDAQ9H2I8 198 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 REEP1Q9H902 201 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ACTR8Q9H981 624 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 A1CFQ9NQ94 594 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 HPS4Q9NQG7 708 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MAN1C1Q9NR34 630 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 GPRC5DQ9NZD1 345 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 ABT1Q9ULW3 272 aaKnown RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 TBC1D30Q9Y2I9 924 aa6.23□□□□□ -1.41
SCN1A-203ENST00000409050 MTF2Q9Y483 593 aaPredicted RBP6.23□□□□□ -1.41
SCN1A-203ENST00000409050 SLC22A2O15244 555 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 MSH4O15457 936 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 RHOCP08134 193 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 CYP3A4P08684 503 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ATP6V1B1P15313 513 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 HPGDP15428 266 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ATP6V1B2P21281 511 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 GTF2E2P29084 291 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 FAUP35544 74 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 RGS7P49802 495 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 RAB2AP61019 212 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 TMEM44Q2T9K0 475 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 AGKQ53H12 422 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 FKBP1CQ5VVH2 108 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 DEFB107AQ8IZN7 70 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 OR8H2Q8N162 312 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PIK3C3Q8NEB9 887 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 FAM172AQ8WUF8 416 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 MCRS1Q96EZ8 462 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ATXN7L3BQ96GX2 97 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 SSU72Q9NP77 194 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ARHGEF3Q9NR81 526 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 GGA3Q9NZ52 723 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 KAT6BQ8WYB5 2073 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 CEMIPQ8WUJ3 1361 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 hCG_2014768A0A024R1R8 64 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 MAP2K7O14733 419 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 DYNC1LI2O43237 492 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PEX1O43933 1283 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PSMG1O95456 288 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 TFE3P19532 575 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 S100A1P23297 94 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PNLIPRP1P54315 467 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ADARP55265 1226 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 DDR1Q08345 913 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PSMD5Q16401 504 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 TMEM119Q4V9L6 283 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 SLC9A9Q8IVB4 645 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 FBXO25Q8TCJ0 367 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 TMEM143Q96AN5 459 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 FAIM2Q9BWQ8 316 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 CORO1CQ9ULV4 474 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 SNX6Q9UNH7 406 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ZCCHC11Q5TAX3 1644 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 DISP2A7MBM2 1401 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ANKRD65E5RJM6 399 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 FOXN3O00409 490 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 EPN2O95208 641 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 KCNH1O95259 989 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 TSPAN19P0C672 248 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 GTF2A2P52657 109 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 RPL19P84098 196 aaKnown RBP6.22□□□□□ -1.41
SCN1A-203ENST00000409050 LGALS3BPQ08380 585 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 FCHO2Q0JRZ9 810 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 GRM3Q14832 879 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 NR6A1Q15406 480 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 LRRC36Q1X8D7 754 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ERICH5Q6P6B1 374 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 ADGRF2Q8IZF7 708 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 STAG3L4Q8TBR4 150 aa6.22□□□□□ -1.41
SCN1A-203ENST00000409050 PTCD2Q8WV60 388 aaKnown RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms