RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 FUBP3Q96I24 572 aaKnown RBP eCLIP9.32□□□□□ -0.92
LIG4-202ENST00000405925 SPATA13Q96N96 652 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 CSPG4P5Q96PW8 444 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 XPO6Q96QU8 1125 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 VAT1Q99536 393 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TM6SF2Q9BZW4 377 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 UBE2OQ9C0C9 1292 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 TASP1Q9H6P5 420 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 GDAP2Q9NXN4 497 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 CPSF2Q9P2I0 782 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 DNAJB4Q9UDY4 337 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 SMG5Q9UPR3 1016 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 R3HDM2Q9Y2K5 976 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 INSL6Q9Y581 213 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 COL4A5P29400 1685 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 ANKRD31Q8N7Z5 1873 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 C8AP07357 584 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 MGAT1P26572 445 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 CDC25CP30307 473 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 RPL22P35268 128 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 GBE1Q04446 702 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 ANKRD20A2Q5SQ80 823 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 MAP3K21Q5TCX8 1036 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 ANKRD20A1Q5TYW2 823 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TRPV1Q8NER1 839 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 ADGRE3Q9BY15 652 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TRIM54Q9BYV2 358 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 LRRC19Q9H756 370 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TMEM51Q9NW97 253 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 PPARGC1AQ9UBK2 798 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 ZNF831Q5JPB2 1677 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 CEP290O15078 2479 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TCRBV7S2A1N4TA0A589 114 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TBL1XO60907 577 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 HSPA1AP0DMV8 641 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 HSPA1BP0DMV9 641 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 CHN1P15882 459 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 CSE1LP55060 971 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 OCRLQ01968 901 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 MARCH8Q5T0T0 291 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 GPR158Q5T848 1215 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 TSPAN17Q96FV3 270 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 EXOC2Q96KP1 924 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 ETNK1Q9HBU6 452 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 IARS2Q9NSE4 1012 aaKnown RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 NSMCE4AQ9NXX6 385 aa9.32□□□□□ -0.92
LIG4-202ENST00000405925 COL11A2P13942 1736 aaPredicted RBP9.32□□□□□ -0.92
LIG4-202ENST00000405925 GMNCA6NCL1 334 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 DDX3YO15523 660 aaKnown RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 LZTS3O60299 673 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 CD48P09326 243 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 PTPN9P43378 593 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 FAM133BQ5BKY9 247 aaKnown RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 SH3PXD2AQ5TCZ1 1133 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 THEMIS2Q5TEJ8 643 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 ERLEC1Q96DZ1 483 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 SGF29Q96ES7 293 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 PAFAH2Q99487 392 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 DDX23Q9BUQ8 820 aaKnown RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 POLR1EQ9GZS1 481 aaKnown RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 CYLDQ9NQC7 956 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 DOCK2Q92608 1830 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 PIRO00625 290 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 SLC9A3R1O14745 358 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 SMIM24O75264 130 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 PYGLP06737 847 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 RALBP11234 206 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 KRT4P19013 534 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 LRPAP1P30533 357 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 MOGSQ13724 837 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 GTF2H3Q13889 308 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.31□□□□□ -0.92
LIG4-202ENST00000405925 TDRD5Q8NAT2 981 aaKnown RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.31□□□□□ -0.92
LIG4-202ENST00000405925 KREMEN2Q8NCW0 462 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 SPDYE1Q8NFV5 336 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 TEKT4Q8WW24 435 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 ARL8AQ96BM9 186 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 SERPINB12Q96P63 405 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 PAAF1Q9BRP4 392 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 PTPRHQ9HD43 1115 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 PCYOX1Q9UHG3 505 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 RAB21Q9UL25 225 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 SQORQ9Y6N5 450 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 ADGRA2Q96PE1 1338 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 TBC1D3BA6NDS4 549 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 KPNA3O00505 521 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 DIAPH2O60879 1101 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 RHOBTB1O94844 696 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 NFKB1P19838 968 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 MAXP61244 160 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 INCA1Q0VD86 236 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 AGBL2Q5U5Z8 902 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 TTC39BQ5VTQ0 682 aaPredicted RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 SLC39A5Q6ZMH5 540 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 TMC3Q7Z5M5 1100 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 SPATS2Q86XZ4 545 aaKnown RBP9.31□□□□□ -0.92
LIG4-202ENST00000405925 HS6ST3Q8IZP7 471 aa9.31□□□□□ -0.92
LIG4-202ENST00000405925 PYROXD2Q8N2H3 581 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms