RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MPP5Q8N3R9 675 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 OR6P1Q8NGX9 317 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 AZIN2Q96A70 460 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 MAML3Q96JK9 1138 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 GMLQ99445 158 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 BARX2Q9UMQ3 279 aaPredicted RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 NAV1Q8NEY1 1877 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 LINC00854A0A1B0GVQ3 168 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 DCAF8L1A6NGE4 600 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 CAPN8A6NHC0 703 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 DFFAO00273 331 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 TRUB2O95900 331 aaKnown RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 FGFR1P11362 822 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 TGM2P21980 687 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 PGGT1BP53609 377 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 RBP5P82980 135 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 TMEM53Q6P2H8 277 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 CYP2R1Q6VVX0 501 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 SNX32Q86XE0 403 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 KBTBD2Q8IY47 623 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 PIWIL2Q8TC59 973 aaKnown RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 NKD2Q969F2 451 aaPredicted RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 HSPBAP1Q96EW2 488 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 OSBPL10Q9BXB5 764 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 MAGEB5Q9BZ81 275 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 C2orf40Q9H1Z8 148 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 PPM1HQ9ULR3 514 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 LTBP4Q8N2S1 1624 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 CNTNAP2Q9UHC6 1331 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 KPNA7A9QM74 516 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 SPAG6O75602 509 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CSH1P0DML2 217 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CSH2P0DML3 217 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 HSDL1Q3SXM5 330 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 UNC5AQ6ZN44 842 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 C14orf80Q86SX3 495 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 TREML1Q86YW5 311 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 C10orf107Q8IVU9 208 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 SNX31Q8N9S9 440 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 SLC44A1Q8WWI5 657 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 PPP2R3CQ969Q6 453 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CELF6Q96J87 481 aaKnown RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 RNF157Q96PX1 679 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 TWNKQ96RR1 684 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 IARS2Q9NSE4 1012 aaKnown RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 DPP3Q9NY33 737 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 M0QYT0 321 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 AGRPO00253 132 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 EPHA3P29320 983 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 IREB2P48200 963 aaKnown RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 SP2Q02086 613 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 OLIG2Q13516 323 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 MOGSQ13724 837 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 DPP9Q86TI2 863 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CLVS1Q8IUQ0 354 aaPredicted RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 SLC7A14Q8TBB6 771 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 SUN5Q8TC36 379 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 TFB1MQ8WVM0 346 aaKnown RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CAMKK2Q96RR4 588 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 ZNF518BQ9C0D4 1074 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 KLHL4Q9C0H6 718 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 THAP1Q9NVV9 213 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 RRN3Q9NYV6 651 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 SDR42E2A6NKP2 422 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 ADM5C9JUS6 153 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 ZSCAN9O15535 394 aaPredicted RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 POLBP06746 335 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 ACO1P21399 889 aaKnown RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 RPS12P25398 132 aaKnown RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 PLIN5Q00G26 463 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CA9Q16790 459 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 ASRGL1Q7L266 308 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 NIPA1Q7RTP0 329 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 TAS1R3Q7RTX0 852 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 IPMKQ8NFU5 416 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 RDM1Q8NG50 284 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 NRBF2Q96F24 287 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 ZNF333Q96JL9 665 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 FAM167AQ96KS9 214 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 OMDQ99983 421 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CHST12Q9NRB3 414 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 SLC7A8Q9UHI5 535 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 TIMM13Q9Y5L4 95 aaPredicted RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 COQ9O75208 318 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CCDC130P13994 396 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 AKAP5P24588 427 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 RABGGTBP53611 331 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 CCDC103Q8IW40 242 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 PCDH20Q8N6Y1 951 aaKnown RBP12.22□□□□□ -0.45
HMGB1-206ENST00000405805 FAM156AQ8NDB6 213 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 ECSITQ9BQ95 431 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 PCDH12Q9NPG4 1184 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 KCNK4Q9NYG8 393 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 ZNF212Q9UDV6 495 aa12.22□□□□□ -0.45
HMGB1-206ENST00000405805 TYROBPO43914 113 aa12.21□□□□□ -0.45
HMGB1-206ENST00000405805 PMPCBO75439 489 aa12.21□□□□□ -0.45
HMGB1-206ENST00000405805 DLGAP3O95886 979 aa12.21□□□□□ -0.45
HMGB1-206ENST00000405805 LYNP07948 512 aa12.21□□□□□ -0.45
HMGB1-206ENST00000405805 SERPINB9P50453 376 aa12.21□□□□□ -0.45
HMGB1-206ENST00000405805 YWHAZP63104 245 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms