RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 TRABDQ9H4I3 376 aa8.13□□□□□ -1.11
USP47-203ENST00000399455 ZFYVE1Q9HBF4 777 aa8.13□□□□□ -1.11
USP47-203ENST00000399455 PIPSLA2A3N6 862 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 KATNA1O75449 491 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 HAUS5O94927 633 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 NUDT14O95848 222 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 MPOP05164 745 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 ELFN1P0C7U0 828 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 RRM2P31350 389 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 SERPINB4P48594 390 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 CASP4P49662 377 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 SLC12A3P55017 1021 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 RPP38P78345 283 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 GCNT1Q02742 428 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 PGS1Q32NB8 556 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 SCAIQ8N9R8 606 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 PLD4Q96BZ4 506 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 MLPHQ9BV36 600 aaPredicted RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 RPS6KL1Q9Y6S9 549 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 NT5C1B-RDH14C9J2C7 533 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 ZNF24P17028 368 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 HNRNPH2P55795 449 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 TPGS2Q68CL5 300 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 SUN3Q8TAQ9 357 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 TAS1R2Q8TE23 839 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 PRRG3Q9BZD7 231 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 MRTO4Q9UKD2 239 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.12□□□□□ -1.11
USP47-203ENST00000399455 AKAP12Q02952 1782 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 NFICP08651 508 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 PABPC1P11940 636 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 FOSL2P15408 326 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 NTSP30990 170 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 KBTBD12Q3ZCT8 623 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 C9orf57Q5W0N0 161 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 GJB7Q6PEY0 223 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 SETD3Q86TU7 594 aaPredicted RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 VGLL2Q8N8G2 317 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 AGR3Q8TD06 166 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 ZNF296Q8WUU4 475 aaPredicted RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 HERVK_113Q902F9 699 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 WNT8BQ93098 351 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 PAWRQ96IZ0 340 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 HSFY1Q96LI6 401 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 SLC4A9Q96Q91 983 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 PABPC3Q9H361 631 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 CHORDC1Q9UHD1 332 aaPredicted RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 COL3A1P02461 1466 aaPredicted RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 TMEM114B3SHH9 223 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 KRT6AP02538 564 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 KRT6BP04259 564 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 SLC35G4P0C7Q5 338 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 HOXB8P17481 243 aaPredicted RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 KRT6CP48668 564 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 TLE2Q04725 743 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 SPANXN3Q5MJ09 141 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 WDR45BQ5MNZ6 344 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 C3orf62Q6ZUJ4 267 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 COLGALT1Q8NBJ5 622 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 KREMEN2Q8NCW0 462 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 FAM161BQ96MY7 647 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 CATSPERZQ9NTU4 200 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 ANKDD1BA6NHY2 528 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 RNASEH2AO75792 299 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 TCF3P15923 654 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 FXR1P51114 621 aaKnown RBP eCLIP8.12□□□□□ -1.11
USP47-203ENST00000399455 NAT16Q8N8M0 369 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 ELMO1Q92556 727 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 TRMT13Q9NUP7 481 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 HBS1LQ9Y450 684 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 MYO1GB0I1T2 1018 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 TM9SF1O15321 606 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 TPBGLP0DKB5 382 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 EEF1DP29692 281 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 DMC1Q14565 340 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 TRIP4Q15650 581 aaPredicted RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 FBXO38Q6PIJ6 1188 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 ANO5Q75V66 913 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 CELF6Q96J87 481 aaKnown RBP8.12□□□□□ -1.11
USP47-203ENST00000399455 SMYD3Q9H7B4 428 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 COMMD8Q9NX08 183 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 CAPN7Q9Y6W3 813 aa8.12□□□□□ -1.11
USP47-203ENST00000399455 FYNP06241 537 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 IMPDH2P12268 514 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 HLA-DPA1P20036 260 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 ICAM3P32942 547 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 ALDH9A1P49189 494 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 AIF1P55008 147 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 GABPB1Q06547 395 aaPredicted RBP8.11□□□□□ -1.11
USP47-203ENST00000399455 SNCBQ16143 134 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 FAM133BQ5BKY9 247 aaKnown RBP8.11□□□□□ -1.11
USP47-203ENST00000399455 TRIM68Q6AZZ1 485 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 SPOCD1Q6ZMY3 1216 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 SV2AQ7L0J3 742 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 TTC7BQ86TV6 843 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 MON1AQ86VX9 555 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 CATSPER1Q8NEC5 780 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 METTL21AQ8WXB1 218 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 ERGIC2Q96RQ1 377 aa8.11□□□□□ -1.11
USP47-203ENST00000399455 GPATCH2LQ9NWQ4 482 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms