RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 EPB41L1Q9H4G0 881 aa5.53□□□□□ -1.52
VPS41-203ENST00000395969 USP29Q9HBJ7 922 aa5.53□□□□□ -1.52
VPS41-203ENST00000395969 MRM3Q9HC36 420 aaKnown RBP5.53□□□□□ -1.52
VPS41-203ENST00000395969 TMEM161AQ9NX61 479 aa5.53□□□□□ -1.52
VPS41-203ENST00000395969 RNF186Q9NXI6 227 aa5.53□□□□□ -1.52
VPS41-203ENST00000395969 SENP1Q9P0U3 644 aa5.53□□□□□ -1.52
VPS41-203ENST00000395969 PPARGC1AQ9UBK2 798 aaKnown RBP5.53□□□□□ -1.52
VPS41-203ENST00000395969 SLC24A2Q9UI40 661 aa5.53□□□□□ -1.52
VPS41-203ENST00000395969 TSPAN16Q9UKR8 245 aa5.53□□□□□ -1.52
VPS41-203ENST00000395969 NUP210Q8TEM1 1887 aaPredicted RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 ZNF638Q14966 1978 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 M0QZ92 97 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ARVCFO00192 962 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 KRT36O76013 467 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ALDH1A2O94788 518 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 CBX6O95503 412 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ASMTLO95671 621 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 F9P00740 461 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 NPR3P17342 541 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 FGFR3P22607 806 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 MAPK1P28482 360 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 RFC1P35251 1148 aaPredicted RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 CAP1Q01518 475 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 SLC45A4Q5BKX6 768 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 SH2D4BQ5SQS7 431 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ISLR2Q6UXK2 745 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 FAM183BPQ6ZVS7 135 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ZNF365Q70YC5 407 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ZBTB33Q86T24 672 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 RNF180Q86T96 592 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 COLGALT2Q8IYK4 626 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ZNF683Q8IZ20 524 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 LRRC43Q8N309 656 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 B3GALNT2Q8NCR0 500 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 APPL2Q8NEU8 664 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 SLC35B4Q969S0 331 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ERLEC1Q96DZ1 483 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 RNF157Q96PX1 679 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 TUBGCP5Q96RT8 1024 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 CENPKQ9BS16 269 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 CENPOQ9BU64 300 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 NXF3Q9H4D5 531 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 SYNCQ9H7C4 482 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 XPNPEP3Q9NQH7 507 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 HESX1Q9UBX0 185 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 TUBGCP4Q9UGJ1 667 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 HMGXB4Q9UGU5 601 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 STOML2Q9UJZ1 356 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 PHTF1Q9UMS5 762 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 GABRQQ9UN88 632 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ST3GAL5Q9UNP4 418 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 NYNRINQ9P2P1 1898 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 ALPK3Q96L96 1907 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 IGLV3-10A0A075B6K4 115 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 AP3B1O00203 1094 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 TRDMT1O14717 391 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 CAPN9O14815 690 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 PRPF4O43172 522 aaKnown RBP eCLIP5.52□□□□□ -1.53
VPS41-203ENST00000395969 MAP3K7O43318 606 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 EDF1O60869 148 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 TTC4O95801 387 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 LATS1O95835 1130 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ITGA2BP08514 1039 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 IL1R2P27930 398 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 PCSK1P29120 753 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 L1CAMP32004 1257 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 CXCR3P49682 368 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 FLT3LGP49771 235 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 HDAC4P56524 1084 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 WDR4P57081 412 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 RPL7AP62424 266 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 MRPS5P82675 430 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 IL9RQ01113 521 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 MESDQ14696 234 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 STAT4Q14765 748 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 CCDC6Q16204 474 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 BRMS1LQ5PSV4 323 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 GJC2Q5T442 439 aaPredicted RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 ALG1LQ6GMV1 187 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 TIFABQ6ZNK6 161 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 MARK2Q7KZI7 788 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 EEPD1Q7L9B9 569 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 CYP4X1Q8N118 509 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 PQLC3Q8N755 202 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ZSCAN18Q8TBC5 510 aaPredicted RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 ZNF398Q8TD17 642 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 DENND1AQ8TEH3 1009 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 NAT14Q8WUY8 206 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 LENG1Q96BZ8 264 aaPredicted RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 PTCD3Q96EY7 689 aaKnown RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 FAM126AQ9BYI3 521 aaPredicted RBP5.52□□□□□ -1.53
VPS41-203ENST00000395969 KCNK9Q9NPC2 374 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ETNK2Q9NVF9 386 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 USP18Q9UMW8 372 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 CHMP2BQ9UQN3 213 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 BACE2Q9Y5Z0 518 aa5.52□□□□□ -1.53
VPS41-203ENST00000395969 ANKRD36A6QL64 1941 aa5.51□□□□□ -1.53
VPS41-203ENST00000395969 MTCL1Q9Y4B5 1905 aaKnown RBP5.51□□□□□ -1.53
VPS41-203ENST00000395969 ARL5CA6NH57 179 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms