RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 FLT3LGP49771 235 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 SLC10A2Q12908 348 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 NME3Q13232 169 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 ZNF362Q5T0B9 420 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 MROH9Q5TGP6 573 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 TAF2Q6P1X5 1199 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 LONP2Q86WA8 852 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 CCNJLQ8IV13 435 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 RFWD2Q8NHY2 731 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 RNF139Q8WU17 664 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 ATP2A3Q93084 1043 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 SPATA17Q96L03 361 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 SIGLEC10Q96LC7 697 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 TMEM237Q96Q45 408 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 RNF39Q9H2S5 420 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 FZD10Q9ULW2 581 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 IPPQ9Y573 584 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 A6NHS1 94 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 SDR42E2A6NKP2 422 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 F5H423 210 aaPredicted RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 ANP32DO95626 131 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 DHRS4L1P0CG22 281 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 NPR3P17342 541 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 WARSP23381 471 aaKnown RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 LILRA4P59901 499 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 MRPS5P82675 430 aaKnown RBP9.91□□□□□ -0.82
COL6A3-204ENST00000392003 ZNF618Q5T7W0 954 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 NCBP2-AS2Q69YL0 99 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 E2F7Q96AV8 911 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 NACC2Q96BF6 587 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 C15orf41Q9Y2V0 281 aa9.91□□□□□ -0.82
COL6A3-204ENST00000392003 SCN4AP35499 1836 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 EEF2KO00418 725 aaKnown RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 KPNA6O60684 536 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 DUSP11O75319 330 aaKnown RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 CBX6O95503 412 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 MLNP12872 115 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 ACAT1P24752 427 aaKnown RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 PTPN4P29074 926 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 SESN2P58004 480 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 PABPC1LQ4VXU2 614 aaKnown RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 PYROXD2Q8N2H3 581 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 NAT9Q9BTE0 207 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 C11orf84Q9BUA3 381 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 TMEM120AQ9BXJ8 343 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 MRGBPQ9NV56 204 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 MTMR10Q9NXD2 777 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 PLLPQ9Y342 182 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 RNF103O00237 685 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 FBXO21O94952 628 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 ETV4P43268 484 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 RPL34P49207 117 aaKnown RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 CCDC92Q53HC0 331 aaPredicted RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 CLNKQ7Z7G1 428 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 CRLF3Q8IUI8 442 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 WDR75Q8IWA0 830 aaKnown RBP9.9□□□□□ -0.82
COL6A3-204ENST00000392003 SLC7A5P1Q8MH63 180 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 ANKLE1Q8NAG6 615 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 MIPOL1Q8TD10 442 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 PTPRN2Q92932 1015 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 WNT8BQ93098 351 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 LGMNQ99538 433 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 OSBPL1AQ9BXW6 950 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 ARHGEF4Q9NR80 690 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 INIPQ9NRY2 104 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 SLC38A7Q9NVC3 462 aa9.9□□□□□ -0.82
COL6A3-204ENST00000392003 FAM159BA6NKW6 160 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 CLDN5O00501 218 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 CCDC22O60826 627 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 WFS1O76024 890 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 SLC10A3P09131 477 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 CSH1P0DML2 217 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 CSH2P0DML3 217 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 SOX4Q06945 474 aaPredicted RBP9.9□□□□□ -0.83
COL6A3-204ENST00000392003 PRKD1Q15139 912 aaPredicted RBP9.9□□□□□ -0.83
COL6A3-204ENST00000392003 MDH1BQ5I0G3 518 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 WSCD1Q658N2 575 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 NCCRP1Q6ZVX7 275 aaPredicted RBP9.9□□□□□ -0.83
COL6A3-204ENST00000392003 PID1Q7Z2X4 250 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 OSTM1Q86WC4 334 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 PDCD7Q8N8D1 485 aaKnown RBP9.9□□□□□ -0.83
COL6A3-204ENST00000392003 PGBD4Q96DM1 585 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 NSL1Q96IY1 281 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 TBC1D10AQ9BXI6 508 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 MAGEB5Q9BZ81 275 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 ZFATQ9P243 1243 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 KLHL8Q9P2G9 620 aaPredicted RBP9.9□□□□□ -0.83
COL6A3-204ENST00000392003 RALGAPA2Q2PPJ7 1873 aa9.9□□□□□ -0.83
COL6A3-204ENST00000392003 WDR27A2RRH5 827 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 A8MUI8 341 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 KLF11O14901 512 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 CA12O43570 354 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 MFSD11O43934 449 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 DGKIO75912 1065 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 ESRRAP11474 423 aaPredicted RBP9.89□□□□□ -0.83
COL6A3-204ENST00000392003 TKTP29401 623 aaKnown RBP9.89□□□□□ -0.83
COL6A3-204ENST00000392003 GARSP41250 739 aaKnown RBP9.89□□□□□ -0.83
COL6A3-204ENST00000392003 TKTL1P51854 596 aa9.89□□□□□ -0.83
COL6A3-204ENST00000392003 PDE1BQ01064 536 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms