RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 COL6A5A8TX70 2615 aa-0.35□□□□□ -2.47
RNU6-540P-201ENST00000384622 UMODL1Q5DID0 1318 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 UNCXA6NJT0 531 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 NEMP1O14524 444 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 PDE6CP51160 858 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ZNF135P52742 658 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 SELENOVP59797 346 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ZNF280AP59817 542 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 CKAP4Q07065 602 aaKnown RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 TRA2AQ13595 282 aaKnown RBP eCLIP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 RAPSNQ13702 412 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ITGA9Q13797 1035 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 HNF4GQ14541 408 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 SEPT2Q15019 361 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ADRM1Q16186 407 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 MUM1L1Q5H9M0 696 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 CREB3L3Q68CJ9 461 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 TRIM65Q6PJ69 517 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 PAQR6Q6TCH4 344 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 PDSS2Q86YH6 399 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 MB21D2Q8IYB1 491 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ZBED8Q8IZ13 594 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ARL14EPQ8N8R7 260 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ZNF114Q8NC26 417 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 OR1N1Q8NGS0 311 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 TMEM190Q8WZ59 177 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 NPIPB3Q92617 1050 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 USP7Q93009 1102 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 FATE1Q969F0 183 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ZNF385AQ96PM9 386 aaKnown RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 TINF2Q9BSI4 451 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 RPP25Q9BUL9 199 aaKnown RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 SPATA9Q9BWV2 254 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 SORBS1Q9BX66 1292 aaKnown RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 DHX33Q9H6R0 707 aaKnown RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 EPS8L2Q9H6S3 715 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 EBF2Q9HAK2 575 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 FGF22Q9HCT0 170 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 DMRT3Q9NQL9 472 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 ST7Q9NRC1 585 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 H2AFY2Q9P0M6 372 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 CACNG5Q9UF02 275 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 DPP7Q9UHL4 492 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 DDX41Q9UJV9 622 aaKnown RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 NDRG4Q9ULP0 352 aaKnown RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 DAAM1Q9Y4D1 1078 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 AMMECR1Q9Y4X0 333 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 MRVI1Q9Y6F6 885 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 COL5A1P20908 1838 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 PIEZO1Q92508 2521 aa-0.36□□□□□ -2.47
RNU6-540P-201ENST00000384622 IGSF10Q6WRI0 2623 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 A0A087X002 238 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 A0A0G2JLM5 398 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 A6NNZ2 444 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 NPIPB11E5RHQ5 1161 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 RHODO00212 210 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 SLC33A1O00400 549 aaPredicted RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 CDX4O14627 284 aaPredicted RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 NPC1O15118 1278 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 EPHB6O15197 1021 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 TMPRSS11DO60235 418 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 IGKV1D-16P01601 117 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 INHBAP08476 426 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 CYP2C9P11712 490 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 CREB1P16220 341 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 GNB3P16520 340 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 C21orf33P30042 268 aaPredicted RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 MT4P47944 62 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 LOXL3P58215 753 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 MS4A2Q01362 244 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 PGM5Q15124 567 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 DDR2Q16832 855 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 CT83Q5H943 113 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 ZNF790Q6PG37 636 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 KDM7AQ6ZMT4 941 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 FRMD7Q6ZUT3 714 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 TBC1D1Q86TI0 1168 aaPredicted RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 NFE4Q86UQ8 179 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 RAB11FIP4Q86YS3 637 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 LYPD1Q8N2G4 141 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 ALG14Q96F25 216 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 EDC3Q96F86 508 aaKnown RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 P2RY11Q96G91 374 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 KAZALD1Q96I82 304 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 DHRS4Q9BTZ2 278 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 ADI1Q9BV57 179 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 POLDIP3Q9BY77 421 aaKnown RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 TTYH3Q9C0H2 523 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 MAGEH1Q9H213 219 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 BRD9Q9H8M2 597 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 IL21RQ9HBE5 538 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 IL36RNQ9UBH0 155 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 EPHA6Q9UF33 1036 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 SCOCQ9UIL1 159 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 ZBTB21Q9ULJ3 1066 aa-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 MRPS28Q9Y2Q9 187 aaKnown RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 HEMK1Q9Y5R4 338 aaPredicted RBP-0.37□□□□□ -2.47
RNU6-540P-201ENST00000384622 HERC2O95714 4834 aa-0.38□□□□□ -2.47
RNU6-540P-201ENST00000384622 VWFP04275 2813 aa-0.38□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms