RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 USP15Q9Y4E8 981 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 PDPK1O15530 556 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 FDX1P10109 184 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 COX7A2P14406 83 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CD40LGP29965 261 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 PEX3P56589 373 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 FOXK1P85037 733 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 HSF2Q03933 536 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CUL2Q13617 745 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZBTB6Q15916 424 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 AASDHQ4L235 1098 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SAMD4BQ5PRF9 694 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 C12orf60Q5U649 245 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 STRIP1Q5VSL9 837 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 FAM91A1Q658Y4 838 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 POLNQ7Z5Q5 900 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 FANCBQ8NB91 859 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 FRS2Q8WU20 508 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ADIPOR1Q96A54 375 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MYOCQ99972 504 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZFYVE28Q9HCC9 887 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ALG13Q9NP73 1137 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CFL2Q9Y281 166 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 DNAJC13O75165 2243 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 KPNA3O00505 521 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ACTL6BO94805 426 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SERPINA1P01009 418 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TUBB4AP04350 444 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 H2AFZP0C0S5 128 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ME2P23368 584 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 VAMP7P51809 220 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 HUNKP57058 714 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RPP38P78345 283 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ROR1Q01973 937 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 LARS2Q15031 903 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CDK10Q15131 360 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CA9Q16790 459 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 HECTD3Q5T447 861 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 FAM102AQ5T9C2 384 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SMARCD3Q6STE5 483 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 H2AFVQ71UI9 128 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 NFATC2IPQ8NCF5 419 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SNRNP27Q8WVK2 155 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RAD51AP1Q96B01 352 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 OTUB2Q96DC9 234 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TSPAN17Q96FV3 270 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF471Q9BX82 626 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF350Q9GZX5 532 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TASP1Q9H6P5 420 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF302Q9NR11 478 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ACOXLQ9NUZ1 547 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RHBDL2Q9NX52 303 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CDY2AQ9Y6F7 541 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CDY1Q9Y6F8 540 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 A8MX80 341 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 B8ZZF3 427 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TPST1O60507 370 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 UBTFL6P0CB48 400 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ATP6V1B2P21281 511 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 THPOP40225 353 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MNDAP41218 407 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RXRGP48443 463 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ARFIP1P53367 373 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 DSTNP60981 165 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SCN1BQ07699 218 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 Q1RN00 199 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ABCA11PQ4W5N1 156 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 C3orf33Q6P1S2 294 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MINDY2Q8NBR6 621 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 IPMKQ8NFU5 416 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 BLOC1S5Q8TDH9 187 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 LIPHQ8WWY8 451 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 CENPIQ92674 756 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TP53INP1Q96A56 240 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TCF25Q9BQ70 676 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SENP6Q9GZR1 1112 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 GOLPH3Q9H4A6 298 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 IFT46Q9NQC8 304 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.73□□□□□ -1.653e-7■■■□□ 19
SCN1A-202ENST00000375405 SLC24A2Q9UI40 661 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 DUSP12Q9UNI6 340 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 EIF3LQ9Y262 564 aaKnown RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 IRAK3Q9Y616 596 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 TLL2Q9Y6L7 1015 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SDK1Q7Z5N4 2213 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 LOC100653049A0A140TA62 436 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ATP6AP2A0A1C7CYW4 349 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 KLHL33A6NCF5 533 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 C3orf70A6NLC5 250 aaPredicted RBP4.73□□□□□ -1.65
SCN1A-202ENST00000375405 LOC110117498-PIK3R3F6TDL0 507 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MYL12BO14950 172 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ATP6AP2O75787 350 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 YY1P25490 414 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 SDC4P31431 198 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 RAB4BP61018 213 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 ACAP1Q15027 740 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 AGKQ53H12 422 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 MPP7Q5T2T1 576 aa4.73□□□□□ -1.65
SCN1A-202ENST00000375405 GLB1LQ6UWU2 654 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms