RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 GALNT8Q9NY28 637 aa21.68■■□□□ 1.06
UPF3A-202ENST00000375299 TRIP11Q15643 1979 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 F5H423 210 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-202ENST00000375299 TNFAIP8O95379 198 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 P4HA1P13674 534 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 DESP17661 470 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 ATICP31939 592 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 GMPRP36959 345 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 NUDT2P50583 147 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 HDAC4P56524 1084 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 SESN2P58004 480 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-202ENST00000375299 DCAF15Q66K64 600 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 C16orf89Q6UX73 402 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 MICALL2Q8IY33 904 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 CXorf38Q8TB03 319 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 ARNTL2Q8WYA1 636 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 DNAJC1Q96KC8 554 aaKnown RBP21.67■■□□□ 1.06
UPF3A-202ENST00000375299 GRIP2Q9C0E4 1043 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 VRTNQ9H8Y1 702 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 ZNF112Q9UJU3 913 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 BARX2Q9UMQ3 279 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-202ENST00000375299 PCDHGB4Q9UN71 923 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 AFG3L2Q9Y4W6 797 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 PCDHGB5Q9Y5G0 923 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 PTPRFP10586 1907 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 CCDC160A6NGH7 325 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 GLDCP23378 1020 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 RPS12P25398 132 aaKnown RBP21.67■■□□□ 1.06
UPF3A-202ENST00000375299 NUMBP49757 651 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 NDST1P52848 882 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 DPYSL2Q16555 572 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 HSP90AA5PQ58FG0 334 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 JADE1Q6IE81 842 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 MAPK15Q8TD08 544 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 WRNIP1Q96S55 665 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 TXNDC16Q9P2K2 825 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 RIMS3Q9UJD0 308 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 FZD1Q9UP38 647 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 DMTF1Q9Y222 760 aa21.67■■□□□ 1.06
UPF3A-202ENST00000375299 LACTBL1A8MY62 500 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 AIM2O14862 343 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 HNRNPRO43390 633 aaKnown RBP21.66■■□□□ 1.06
UPF3A-202ENST00000375299 THRAP10827 490 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 TCF7P36402 384 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-202ENST00000375299 GP5P40197 560 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 MYBPC1Q00872 1141 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 MYBPC3Q14896 1274 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 ZFP1Q6P2D0 407 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 ISLR2Q6UXK2 745 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 TICAM1Q8IUC6 712 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 HTR3CQ8WXA8 447 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 ZNF668Q96K58 619 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-202ENST00000375299 CNBD2Q96M20 576 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 FZD8Q9H461 694 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 DHX35Q9H5Z1 703 aaKnown RBP21.66■■□□□ 1.06
UPF3A-202ENST00000375299 SNX15Q9NRS6 342 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 PIH1D1Q9NWS0 290 aaKnown RBP21.66■■□□□ 1.06
UPF3A-202ENST00000375299 NR2E3Q9Y5X4 410 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 LOC285556D6RIA3 1793 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 A0A0A0MRY4 1105 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 E2F8A0AVK6 867 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 INO80B-WBP1J3KQ70 363 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 GPR25O00155 361 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 SRGAP2BP0DMP2 458 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 PIK3R1P27986 724 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 SERPINB5P36952 375 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 MRPS22P82650 360 aaKnown RBP21.66■■□□□ 1.06
UPF3A-202ENST00000375299 SLC6A3Q01959 620 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 INCA1Q0VD86 236 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 SMAD1Q15797 465 aaKnown RBP21.66■■□□□ 1.06
UPF3A-202ENST00000375299 GOLGA7BQ2TAP0 167 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 KHSRPQ92945 711 aaKnown RBP eCLIP21.66■■□□□ 1.069e-6■□□□□ 8.8
UPF3A-202ENST00000375299 FAM167AQ96KS9 214 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 SPATA13Q96N96 652 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 OR52B2Q96RD2 323 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 INO80BQ9C086 356 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-202ENST00000375299 TCF7L2Q9NQB0 619 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 HESX1Q9UBX0 185 aa21.66■■□□□ 1.06
UPF3A-202ENST00000375299 TMEM114B3SHH9 223 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 GAS2O43903 313 aaKnown RBP21.65■■□□□ 1.06
UPF3A-202ENST00000375299 FAM200BP0CF97 657 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 FLOT2Q14254 428 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 MYLK3Q32MK0 819 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 NAPRTQ6XQN6 538 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 CMC1Q7Z7K0 106 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 ADCY4Q8NFM4 1077 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 DNERQ8NFT8 737 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 DTLQ9NZJ0 730 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 PIM2Q9P1W9 311 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 APPL1Q9UKG1 709 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 IRF6O14896 467 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 ATP6V1B1P15313 513 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 MAGEA12P43365 314 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 GMPSP49915 693 aaPredicted RBP21.65■■□□□ 1.06
UPF3A-202ENST00000375299 HPCAP84074 193 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 GRTP1Q5TC63 336 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 PMF1Q6P1K2 205 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 BNC2Q6ZN30 1099 aaPredicted RBP21.65■■□□□ 1.06
UPF3A-202ENST00000375299 CATSPERGQ6ZRH7 1159 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 SNX32Q86XE0 403 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms