RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SPANXN3Q5MJ09 141 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 OTOP1Q7RTM1 612 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 FAM9CQ8IZT9 166 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 DNAJC19Q96DA6 116 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 ZNF512Q96ME7 567 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 RPRD1AQ96P16 312 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 KLK14Q9P0G3 267 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 ZMYM2Q9UBW7 1377 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 PLA2G6O60733 806 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 ASMTLO95671 621 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 CLCN3P51790 818 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 DLG4P78352 724 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 POLD3Q15054 466 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 IL17AQ16552 155 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 FNDC5Q8NAU1 212 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 OR7A2PQ8NGA2 310 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 APOL4Q9BPW4 351 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 MTG1Q9BT17 334 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 SLC38A7Q9NVC3 462 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 C6orf203Q9P0P8 240 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 SNTNA6NMZ2 147 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 FSCN2O14926 492 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 CPSF4O95639 269 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 CAPN1P07384 714 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 UQCRBP14927 111 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 SP100P23497 879 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 GALK1P51570 392 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 LIN52Q52LA3 116 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 ZNF470Q6ECI4 717 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 APOBEC3FQ8IUX4 373 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 EZH1Q92800 747 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 RIBC2Q9H4K1 309 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 FRMPD4Q14CM0 1322 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 SERPINA6P08185 405 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 ERVK-10P10266 1014 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 C4BPBP20851 252 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 KDELR1P24390 212 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 ITFG1Q8TB96 612 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 RTFDC1Q9BY42 306 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 TMEM39BQ9GZU3 492 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 BTBD3Q9Y2F9 522 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 USP20Q9Y2K6 914 aa19.93■□□□□ 0.78
CCDC88B-202ENST00000356786 NCAM2O15394 837 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 DYNC1LI2O43237 492 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 MGRN1O60291 552 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 GLP2RO95838 553 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 CALCAP01258 141 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 CYP1A2P05177 515 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 CTSHP09668 335 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 SLC2A4P14672 509 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 GLRA2P23416 452 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 YY1P25490 414 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 UGT2B28Q9BY64 529 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 XPNPEP3Q9NQH7 507 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 ANAPC2Q9UJX6 822 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 KRT87PA6NCN2 255 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 PRR5-ARHGAP8B1AHC4 643 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 C19orf81C9J6K1 198 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 CRABP2P29373 138 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 TALDO1P37837 337 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 ARHGAP8P85298 464 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 GPR107Q5VW38 600 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 C8orf59Q8N0T1 100 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 TRPC4APQ8TEL6 797 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 MARK4Q96L34 752 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 DPY30Q9C005 99 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 RBM22Q9NW64 420 aaKnown RBP eCLIP19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 TSPAN16Q9UKR8 245 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 RGSL1A5PLK6 1076 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 CCDC154A6NI56 674 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 UPP2O95045 317 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 STAG3L1P0CL83 205 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 PIK3R1P27986 724 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 MZF1P28698 734 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 HK2P52789 917 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 TRIQKQ629K1 86 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 TYW3Q6IPR3 259 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 TIGD7Q6NT04 549 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 NOTUMQ6P988 496 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 OLFML1Q6UWY5 402 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 AMIGO2Q86SJ2 522 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 SLITRK1Q96PX8 696 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 ACOX2Q99424 681 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 TMEM165Q9HC07 324 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 MAP3K20Q9NYL2 800 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 C15orf38-AP3S2A0A0A6YYH1 394 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 GUCA1CO95843 209 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 HMGCRP04035 888 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 NELFEP18615 380 aaKnown RBP19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 PSME3P61289 254 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 LPCAT4Q643R3 524 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 ARCQ7LC44 396 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 ARPINQ7Z6K5 226 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 SFRP1Q8N474 314 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 ALLCQ8N6M5 410 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 MBOAT7Q96N66 472 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 DIABLOQ9NR28 239 aa19.92■□□□□ 0.78
CCDC88B-202ENST00000356786 SYNCRIPO60506 623 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 SUPT20HL2P0C7V6 817 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 TAL1P17542 331 aaPredicted RBP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms