RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 C9orf16Q9BUW7 83 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 FHDC1Q9C0D6 1143 aaPredicted RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 ATP13A1Q9HD20 1204 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 HAO1Q9UJM8 370 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 ZNF112Q9UJU3 913 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TMX2Q9Y320 296 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 PIPSLA2A3N6 862 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 BCLAF3A2AJT9 711 aaKnown RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 QSOX1O00391 747 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 FGF10O15520 208 aaPredicted RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 ZBTB14O43829 449 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 LDLRP01130 860 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 VTNP04004 478 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TLX1P31314 330 aaPredicted RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 MLH1P40692 756 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 RAP1GAPP47736 663 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 CSNK2BP67870 215 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 BCL2L1Q07817 233 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 R3HDM1Q15032 1099 aaKnown RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 PPM1LQ5SGD2 360 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 INTS11Q5TA45 600 aaKnown RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 CCDC149Q6ZUS6 474 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TMC7Q7Z402 723 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 MILR1Q7Z6M3 343 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TLK2Q86UE8 772 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TMPRSS6Q8IU80 811 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 CLEC10AQ8IUN9 316 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 DENND6AQ8IWF6 608 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 ZFP28Q8NHY6 868 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 SPPL2AQ8TCT8 520 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 FIG4Q92562 907 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 BHMTQ93088 406 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 CBWD1Q9BRT8 395 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TMEM79Q9BSE2 394 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 SPATA5L1Q9BVQ7 753 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 LRRC4BQ9NT99 713 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 THAP1Q9NVV9 213 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 PRKAG3Q9UGI9 489 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 SNCAIPQ9Y6H5 919 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 UNC13BO14795 1591 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TBKBP1A7MCY6 615 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TRDMT1O14717 391 aaKnown RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 SGTAO43765 313 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 IL6P05231 212 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TSPAN19P0C672 248 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 HSMCR30P0CW71 290 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 ITGAXP20702 1163 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 KLRC2P26717 231 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 TRIM25Q14258 630 aaKnown RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 GRIK4Q16099 956 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 KLHL24Q6TFL4 600 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 ZNF720Q7Z2F6 126 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 ZNF605Q86T29 641 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 FBXO16Q8IX29 292 aaPredicted RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 SCAIQ8N9R8 606 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 UTP15Q8TED0 518 aaKnown RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 HTR3CQ8WXA8 447 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 ATL1Q8WXF7 558 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 GBA2Q9HCG7 927 aaPredicted RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 MRPL39Q9NYK5 338 aaKnown RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 CDC42BPAQ5VT25 1732 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 C1orf167Q5SNV9 1468 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 SEC22BO75396 215 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 CYP7B1O75881 506 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 FGRP09769 529 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 PSMB9P28065 219 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 OR1E1P30953 314 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 NME5P56597 212 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 KCNMA1Q12791 1236 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 SPIDRQ14159 915 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 FAM187BQ17R55 369 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 RBM43Q6ZSC3 357 aaKnown RBP6.6□□□□□ -1.35
UPF2-201ENST00000356352 FAM220AQ7Z4H9 259 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 FAM131BQ86XD5 332 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 PALB2Q86YC2 1186 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 FNDC5Q8NAU1 212 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 DLG3Q92796 817 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 GPATCH2LQ9NWQ4 482 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 ATP6V1HQ9UI12 483 aa6.6□□□□□ -1.35
UPF2-201ENST00000356352 ASNA1O43681 348 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 PRMT3O60678 531 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 MTRF1O75570 445 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 CABYRO75952 493 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 EPN2O95208 641 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 BCL10O95999 233 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 FGFR1P11362 822 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 POLR2EP19388 210 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 TYMPP19971 482 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 BGNP21810 368 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 SERPINA4P29622 427 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 MAPK9P45984 424 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 SCTRP47872 440 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 COPZ1P61923 177 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 PLIN5Q00G26 463 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 FASTKQ14296 549 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 PABPC1LQ4VXU2 614 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 ARMC12Q5T9G4 340 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 RIPOR1Q6ZS17 1223 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 MYCBPAPQ8TBZ2 947 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 MDM1Q8TC05 714 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms