RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CAVIN1Q6NZI2 390 aaKnown RBP19.02■□□□□ 0.64
CLN3-202ENST00000355477 SLC36A4Q6YBV0 504 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 TMPRSS6Q8IU80 811 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 ANKRD20A12PQ8NF67 263 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 RNF34Q969K3 372 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 TTC17Q96AE7 1141 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 RTKNQ9BST9 563 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 SLC12A6Q9UHW9 1150 aa19.02■□□□□ 0.64
CLN3-202ENST00000355477 ASCC3Q8N3C0 2202 aaKnown RBP19.01■□□□□ 0.63
CLN3-202ENST00000355477 NYNRINQ9P2P1 1898 aaKnown RBP19.01■□□□□ 0.63
CLN3-202ENST00000355477 DOCK4Q8N1I0 1966 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 TYW5A2RUC4 315 aaKnown RBP19.01■□□□□ 0.63
CLN3-202ENST00000355477 M0QYT0 321 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 AP5Z1O43299 807 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 LUC7L3O95232 432 aaKnown RBP19.01■□□□□ 0.63
CLN3-202ENST00000355477 SLC2A3P11169 496 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 ABCB4P21439 1286 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 ITPKAP23677 461 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 CAMK2GQ13555 558 aaPredicted RBP19.01■□□□□ 0.63
CLN3-202ENST00000355477 NAA35Q5VZE5 725 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 METTL3Q86U44 580 aaKnown RBP19.01■□□□□ 0.63
CLN3-202ENST00000355477 SLC41A1Q8IVJ1 513 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 ZNF557Q8N988 423 aaPredicted RBP19.01■□□□□ 0.63
CLN3-202ENST00000355477 NPY6RQ99463 290 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 ITM2CQ9NQX7 267 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.01■□□□□ 0.63
CLN3-202ENST00000355477 CACNA1EQ15878 2313 aa19.01■□□□□ 0.63
CLN3-202ENST00000355477 LNP1A1A4G5 178 aa19■□□□□ 0.63
CLN3-202ENST00000355477 F5H5T6 163 aa19■□□□□ 0.63
CLN3-202ENST00000355477 ATP5BP06576 529 aaKnown RBP19■□□□□ 0.63
CLN3-202ENST00000355477 CSKP41240 450 aa19■□□□□ 0.63
CLN3-202ENST00000355477 LIMK1P53667 647 aa19■□□□□ 0.63
CLN3-202ENST00000355477 IRX4P78413 519 aa19■□□□□ 0.63
CLN3-202ENST00000355477 FMO1Q01740 532 aa19■□□□□ 0.63
CLN3-202ENST00000355477 CDR2Q01850 454 aa19■□□□□ 0.63
CLN3-202ENST00000355477 CDH18Q13634 790 aa19■□□□□ 0.63
CLN3-202ENST00000355477 FAM102AQ5T9C2 384 aaPredicted RBP19■□□□□ 0.63
CLN3-202ENST00000355477 STPG1Q5TH74 334 aa19■□□□□ 0.63
CLN3-202ENST00000355477 LYSMD4Q5XG99 296 aa19■□□□□ 0.63
CLN3-202ENST00000355477 TRNP1Q6NT89 227 aa19■□□□□ 0.63
CLN3-202ENST00000355477 FBXL22Q6P050 247 aa19■□□□□ 0.63
CLN3-202ENST00000355477 CIR1Q86X95 450 aaPredicted RBP19■□□□□ 0.63
CLN3-202ENST00000355477 ZNF677Q86XU0 584 aa19■□□□□ 0.63
CLN3-202ENST00000355477 CACUL1Q86Y37 369 aa19■□□□□ 0.63
CLN3-202ENST00000355477 DHX40Q8IX18 779 aaKnown RBP19■□□□□ 0.63
CLN3-202ENST00000355477 IGSF8Q969P0 613 aa19■□□□□ 0.63
CLN3-202ENST00000355477 NT5C3BQ969T7 300 aa19■□□□□ 0.63
CLN3-202ENST00000355477 SIPA1Q96FS4 1042 aa19■□□□□ 0.63
CLN3-202ENST00000355477 MYO19Q96H55 970 aa19■□□□□ 0.63
CLN3-202ENST00000355477 PCMTD1Q96MG8 357 aaPredicted RBP19■□□□□ 0.63
CLN3-202ENST00000355477 ERGIC2Q96RQ1 377 aa19■□□□□ 0.63
CLN3-202ENST00000355477 MTG2Q9H4K7 406 aa19■□□□□ 0.63
CLN3-202ENST00000355477 ANLNQ9NQW6 1124 aa19■□□□□ 0.63
CLN3-202ENST00000355477 PIGVQ9NUD9 493 aa19■□□□□ 0.63
CLN3-202ENST00000355477 USP36Q9P275 1121 aaKnown RBP19■□□□□ 0.63
CLN3-202ENST00000355477 PILRBQ9UKJ0 227 aa19■□□□□ 0.63
CLN3-202ENST00000355477 ATXN2Q99700 1313 aaKnown RBP19■□□□□ 0.63
CLN3-202ENST00000355477 MED19A0JLT2 244 aaPredicted RBP18.99■□□□□ 0.63
CLN3-202ENST00000355477 H0Y626 953 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 GOLGA8SH3BPF8 625 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 I6L893 689 aaPredicted RBP18.99■□□□□ 0.63
CLN3-202ENST00000355477 KHNYNO15037 678 aaKnown RBP18.99■□□□□ 0.63
CLN3-202ENST00000355477 PAGE1O75459 146 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 ADCY5O95622 1261 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 CYP1A1P04798 512 aaPredicted RBP18.99■□□□□ 0.63
CLN3-202ENST00000355477 SCNN1AP37088 669 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 GGCXP38435 758 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 STAT1P42224 750 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 CTSOP43234 321 aaPredicted RBP18.99■□□□□ 0.63
CLN3-202ENST00000355477 TPMTP51580 245 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 IRAK1P51617 712 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 FOXK2Q01167 660 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 ZNF33AQ06730 810 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 PITRM1Q5JRX3 1037 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 C14orf80Q86SX3 495 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 SYT12Q8IV01 421 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 APCDD1Q8J025 514 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 NEK11Q8NG66 645 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 OR2T3Q8NH03 318 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 PRCCQ92733 491 aaPredicted RBP18.99■□□□□ 0.63
CLN3-202ENST00000355477 MRGPRX3Q96LB0 322 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 SPAG5Q96R06 1193 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 PRSS16Q9NQE7 514 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 KIAA1522Q9P206 1035 aaPredicted RBP18.99■□□□□ 0.63
CLN3-202ENST00000355477 TMEM59LQ9UK28 342 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 HS3ST4Q9Y661 456 aa18.99■□□□□ 0.63
CLN3-202ENST00000355477 TM4SF5O14894 197 aa18.98■□□□□ 0.63
CLN3-202ENST00000355477 CD6P30203 668 aa18.98■□□□□ 0.63
CLN3-202ENST00000355477 FLT3P36888 993 aa18.98■□□□□ 0.63
CLN3-202ENST00000355477 CXCR3P49682 368 aa18.98■□□□□ 0.63
CLN3-202ENST00000355477 NUMBP49757 651 aa18.98■□□□□ 0.63
CLN3-202ENST00000355477 SULT1E1P49888 294 aa18.98■□□□□ 0.63
CLN3-202ENST00000355477 AUHQ13825 339 aaKnown RBP18.98■□□□□ 0.63
CLN3-202ENST00000355477 CCDC117Q8IWD4 279 aaPredicted RBP18.98■□□□□ 0.63
CLN3-202ENST00000355477 CCAR2Q8N163 923 aaKnown RBP18.98■□□□□ 0.63
CLN3-202ENST00000355477 SLC30A5Q8TAD4 765 aa18.98■□□□□ 0.63
CLN3-202ENST00000355477 TOE1Q96GM8 510 aaKnown RBP18.98■□□□□ 0.63
CLN3-202ENST00000355477 ZNF419Q96HQ0 510 aaPredicted RBP18.98■□□□□ 0.63
CLN3-202ENST00000355477 PCDHB18PQ96TA0 734 aa18.98■□□□□ 0.63
CLN3-202ENST00000355477 TBCBQ99426 244 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms