RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 IFRD2Q12894 506 aaPredicted RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 LRRC26Q2I0M4 334 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 USP41Q3LFD5 358 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 ACCSLQ4AC99 568 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 WASHC2DQ5SRD0 308 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 AP1ARQ63HQ0 302 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 MON1AQ86VX9 555 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 RNF217Q8TC41 542 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 DQX1Q8TE96 717 aaKnown RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 RNF34Q969K3 372 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 TOP1MTQ969P6 601 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 RTP4Q96DX8 246 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 THOC1Q96FV9 657 aaKnown RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 B3GALT6Q96L58 329 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 PGLYRP2Q96PD5 576 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 PHACTR1Q9C0D0 580 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 LRMDAQ9H2I8 198 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 CWH43Q9H720 699 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 ARHGEF4Q9NR80 690 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 NUP205Q92621 2012 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 TNRC18O15417 2968 aaPredicted RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 MKI67P46013 3256 aaKnown RBP13.19□□□□□ -0.3
CLK3-201ENST00000345005 KCNN4O15554 427 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 CREB3O43889 395 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 RTN3O95197 1032 aaPredicted RBP13.19□□□□□ -0.3
CLK3-201ENST00000345005 IGLV3-25P01717 112 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 AMHP03971 560 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 PBX3P40426 434 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 ARPP19P56211 112 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 PPARDQ03181 441 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 SPARCL1Q14515 664 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 DDR2Q16832 855 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 SLC45A4Q5BKX6 768 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 RTP2Q5QGT7 225 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 NCBP2-AS2Q69YL0 99 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 PDZD4Q76G19 769 aaPredicted RBP13.19□□□□□ -0.3
CLK3-201ENST00000345005 NECAB2Q7Z6G3 386 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 TAC4Q86UU9 113 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 LMNTD2Q8IXW0 634 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 FITM2Q8N6M3 262 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 ATAD1Q8NBU5 361 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 UHMK1Q8TAS1 419 aaKnown RBP13.19□□□□□ -0.3
CLK3-201ENST00000345005 MGARPQ8TDB4 240 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 VWCEQ96DN2 955 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 TMPRSS4Q9NRS4 437 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 COMMD8Q9NX08 183 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 IL37Q9NZH6 218 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 PAK5Q9P286 719 aa13.19□□□□□ -0.3
CLK3-201ENST00000345005 FARP1Q9Y4F1 1045 aaPredicted RBP13.19□□□□□ -0.3
CLK3-201ENST00000345005 MYO18AQ92614 2054 aaKnown RBP13.19□□□□□ -0.3
CLK3-201ENST00000345005 CARNS1A5YM72 827 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 KIAA0355O15063 1070 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 DIAPH2O60879 1101 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 ZNF189O75820 626 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 EFEMP2O95967 443 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 KRT16P08779 473 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 RBL1P28749 1068 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 GBE1Q04446 702 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 SLC10A2Q12908 348 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 SEMA3BQ13214 749 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 DPYSQ14117 519 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 RBBP5Q15291 538 aaKnown RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 ZRSR2Q15696 482 aaKnown RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 BRMS1LQ5PSV4 323 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 CAPRIN2Q6IMN6 1127 aaKnown RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 RFX8Q6ZV50 586 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 TAS1R1Q7RTX1 841 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 SCD5Q86SK9 330 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 TMEM173Q86WV6 379 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 ANKRD42Q8N9B4 389 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 PRCCQ92733 491 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 SPATA17Q96L03 361 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 LRRC37BQ96QE4 947 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 RBM15Q96T37 977 aaKnown RBP eCLIP13.18□□□□□ -0.32e-6■■■■□ 20.2
CLK3-201ENST00000345005 TMEM106CQ9BVX2 250 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 TKTL2Q9H0I9 626 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 SMOC2Q9H3U7 446 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 ETNK1Q9HBU6 452 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 SSU72Q9NP77 194 aaKnown RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 NINJ2Q9NZG7 142 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 DTLQ9NZJ0 730 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 LRRC42Q9Y546 428 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 RAD54BQ9Y620 910 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 MTMR11A4FU01 709 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 TRAFD1O14545 582 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 HAPLN1P10915 354 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 TAC1P20366 129 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 MAGEA4P43358 317 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 TPI1P60174 286 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 RPL10AP62906 217 aaKnown RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 EIF4EBP2Q13542 120 aaPredicted RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 BLMHQ13867 455 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 LRRC14Q15048 493 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 PAFAH1B3Q15102 231 aaKnown RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 KYNUQ16719 465 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 SPOUT1Q5T280 376 aaKnown RBP13.18□□□□□ -0.3
CLK3-201ENST00000345005 KCNT2Q6UVM3 1135 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 RNF19BQ6ZMZ0 732 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 CENPUQ71F23 418 aa13.18□□□□□ -0.3
CLK3-201ENST00000345005 TMEM199Q8N511 208 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms