RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 STN1Q9H668 368 aaKnown RBP22.96■■□□□ 1.27
TRIM28-202ENST00000341753 COPS7BQ9H9Q2 264 aaPredicted RBP22.96■■□□□ 1.27
TRIM28-202ENST00000341753 MYO18AQ92614 2054 aaKnown RBP22.96■■□□□ 1.27
TRIM28-202ENST00000341753 INO80B-WBP1J3KQ70 363 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 CFLARO15519 480 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 RPL5P46777 297 aaKnown RBP22.95■■□□□ 1.27
TRIM28-202ENST00000341753 PKNOX1P55347 436 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 MYBPC3Q14896 1274 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 NOL9Q5SY16 702 aaKnown RBP22.95■■□□□ 1.27
TRIM28-202ENST00000341753 C6orf52Q5T4I8 152 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 ILDR2Q71H61 639 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 HACE1Q8IYU2 909 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 BTBD9Q96Q07 612 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 PRPF18Q99633 342 aaKnown RBP22.95■■□□□ 1.27
TRIM28-202ENST00000341753 INO80BQ9C086 356 aaPredicted RBP22.95■■□□□ 1.27
TRIM28-202ENST00000341753 NRBP2Q9NSY0 501 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 TMCO1Q9UM00 188 aa22.95■■□□□ 1.27
TRIM28-202ENST00000341753 LTBP3Q9NS15 1303 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 RGS2P41220 211 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 PDK2Q15119 407 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 MYLK3Q32MK0 819 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 SH3D19Q5HYK7 790 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 FBXO16Q8IX29 292 aaPredicted RBP22.95■■□□□ 1.26
TRIM28-202ENST00000341753 SCUBE3Q8IX30 993 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 PLD6Q8N2A8 252 aaKnown RBP22.95■■□□□ 1.26
TRIM28-202ENST00000341753 USP13Q92995 863 aaPredicted RBP22.95■■□□□ 1.26
TRIM28-202ENST00000341753 DHX35Q9H5Z1 703 aaKnown RBP22.95■■□□□ 1.26
TRIM28-202ENST00000341753 WDR55Q9H6Y2 383 aaPredicted RBP22.95■■□□□ 1.26
TRIM28-202ENST00000341753 SSX2IPQ9Y2D8 614 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 AP4B1Q9Y6B7 739 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 A0A1B0GTW7 788 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 ATP9BO43861 1147 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 FBXO21O94952 628 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 AMHP03971 560 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 FAM200BP0CF97 657 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 MLH1P40692 756 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 OLIG2Q13516 323 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 Q3C1V9 767 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 CDKL3Q8IVW4 592 aaPredicted RBP22.95■■□□□ 1.26
TRIM28-202ENST00000341753 ZFP28Q8NHY6 868 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 KCNK16Q96T55 309 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 TSPAN16Q9UKR8 245 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 PSMD13Q9UNM6 376 aa22.95■■□□□ 1.26
TRIM28-202ENST00000341753 TRPA1O75762 1119 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 HSPA4LO95757 839 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 SRGAP2BP0DMP2 458 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 MYBPC1Q00872 1141 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 NIPAL4Q0D2K0 466 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 RIOX2Q8IUF8 465 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 SEPT1Q8WYJ6 367 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 B3GNT5Q9BYG0 378 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 PTTG2Q9NZH5 202 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 DCDC2Q9UHG0 476 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 PENKP01210 267 aaPredicted RBP22.94■■□□□ 1.26
TRIM28-202ENST00000341753 CPA3P15088 417 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 XRCC1P18887 633 aaPredicted RBP22.94■■□□□ 1.26
TRIM28-202ENST00000341753 THOP1P52888 689 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 B3GNT6Q6ZMB0 384 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 SNX32Q86XE0 403 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 MARVELD2Q8N4S9 558 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 LRGUKQ96M69 825 aa22.94■■□□□ 1.26
TRIM28-202ENST00000341753 PDLIM1O00151 329 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 PEX1O43933 1283 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 MAFO75444 373 aaPredicted RBP22.93■■□□□ 1.26
TRIM28-202ENST00000341753 CCR10P46092 362 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 EFNA5P52803 228 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 NDST1P52848 882 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 BOLA3Q53S33 107 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 GJC2Q5T442 439 aaPredicted RBP22.93■■□□□ 1.26
TRIM28-202ENST00000341753 ATF7IP2Q5U623 682 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 MPZL3Q6UWV2 235 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 CDRT15Q96T59 188 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 MAGED2Q9UNF1 606 aaPredicted RBP22.93■■□□□ 1.26
TRIM28-202ENST00000341753 SIP14410 1827 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 TPSB2P20231 275 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 GRK2P25098 689 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 PCSK6P29122 969 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 SURF1Q15526 300 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 TPSAB1Q15661 275 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 JADE1Q6IE81 842 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 ZBTB8OSQ8IWT0 167 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 LGMNQ99538 433 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 CSADQ9Y600 493 aa22.93■■□□□ 1.26
TRIM28-202ENST00000341753 ZBTB42B2RXF5 422 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 STX16-NPEPL1H3BU86 382 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 B4GALT4O60513 344 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 GCATO75600 419 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 EDNRBP24530 442 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 CNTFP26441 200 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 SDC4P31431 198 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 CDKL1Q00532 357 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 CBLBQ13191 982 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 HEATR6Q6AI08 1181 aaKnown RBP22.92■■□□□ 1.26
TRIM28-202ENST00000341753 CDKL2Q92772 493 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 KCNN1Q92952 543 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 ITFG2Q969R8 447 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 CAB39LQ9H9S4 337 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 RPF1Q9H9Y2 349 aaKnown RBP22.92■■□□□ 1.26
TRIM28-202ENST00000341753 WDR90Q96KV7 1748 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 LACTBL1A8MY62 500 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms