RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ABI2Q9NYB9 513 aaPredicted RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 UTP6Q9NYH9 597 aaKnown RBP12.24□□□□□ -0.45
USP1-201ENST00000339950 TAGLN3Q9UI15 199 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 VANGL2Q9ULK5 521 aa12.24□□□□□ -0.45
USP1-201ENST00000339950 SLC15A5A6NIM6 579 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 MEIS3P2A8K0S8 358 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 CASQ2O14958 399 aaPredicted RBP12.23□□□□□ -0.45
USP1-201ENST00000339950 MSI1O43347 362 aaKnown RBP12.23□□□□□ -0.45
USP1-201ENST00000339950 CHRNGP07510 517 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 CYP3A5P20815 502 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 MPSTP25325 297 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 CNGA3Q16281 694 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 SCIMPQ6UWF3 145 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 DDIASQ8IXT1 998 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 ANKLE1Q8NAG6 615 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 KCTD4Q8WVF5 259 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 SYT15Q9BQS2 421 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 COPS7BQ9H9Q2 264 aaPredicted RBP12.23□□□□□ -0.45
USP1-201ENST00000339950 CLIC5Q9NZA1 410 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 PRKAG3Q9UGI9 489 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 PPM1HQ9ULR3 514 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 TNFSF13BQ9Y275 285 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 PLLPQ9Y342 182 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 ACTL7BQ9Y614 415 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 NUMBLQ9Y6R0 609 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 NFASCO94856 1347 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 C9IYK1 514 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 LMNAP02545 664 aaKnown RBP12.23□□□□□ -0.45
USP1-201ENST00000339950 NFKB1P19838 968 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 GRIK1P39086 918 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 TPD52P55327 224 aaPredicted RBP12.23□□□□□ -0.45
USP1-201ENST00000339950 GJA9P57773 515 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 MED21Q13503 144 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 ARHGAP17Q68EM7 881 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 PDZD4Q76G19 769 aaPredicted RBP12.23□□□□□ -0.45
USP1-201ENST00000339950 TRIML2Q8N7C3 387 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 DTLQ9NZJ0 730 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 MPP6Q9NZW5 540 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 RBPJLQ9UBG7 517 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 CRYL1Q9Y2S2 319 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 COL22A1Q8NFW1 1626 aaPredicted RBP12.23□□□□□ -0.45
USP1-201ENST00000339950 SCN9AQ15858 1988 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 CDK5RAP2Q96SN8 1893 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 BHMG1C9JSJ3 638 aaPredicted RBP12.23□□□□□ -0.45
USP1-201ENST00000339950 PRPF4O43172 522 aaKnown RBP eCLIP12.23□□□□□ -0.45
USP1-201ENST00000339950 PIGNO95427 931 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 ITGA2BP08514 1039 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 OR4Q2P0C623 313 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 MPP3Q13368 585 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 GNASQ5JWF2 1037 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 PPM1LQ5SGD2 360 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 LRRC8EQ6NSJ5 796 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 ERO1BQ86YB8 467 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 RIOX2Q8IUF8 465 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 SLC41A1Q8IVJ1 513 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 SH3TC2Q8TF17 1288 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 KHSRPQ92945 711 aaKnown RBP eCLIP12.23□□□□□ -0.459e-6■□□□□ 10.6
USP1-201ENST00000339950 CCDC167Q9P0B6 97 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 SFMBT1Q9UHJ3 866 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 LAMB1P07942 1786 aa12.23□□□□□ -0.45
USP1-201ENST00000339950 RPS12P25398 132 aaKnown RBP12.22□□□□□ -0.45
USP1-201ENST00000339950 TAF6P49848 677 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 CDH13P55290 713 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 DGKDQ16760 1214 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 PITRM1Q5JRX3 1037 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 PHTF2Q8N3S3 785 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TDRD5Q8NAT2 981 aaKnown RBP12.22□□□□□ -0.45
USP1-201ENST00000339950 PIWIL2Q8TC59 973 aaKnown RBP12.22□□□□□ -0.45
USP1-201ENST00000339950 SLCO2A1Q92959 643 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TUBB6Q9BUF5 446 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 FICDQ9BVA6 458 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 PFDN4Q9NQP4 134 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 ASB14A6NK59 587 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TMEM233B4DJY2 109 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 OAS1P00973 400 aaKnown RBP12.22□□□□□ -0.45
USP1-201ENST00000339950 FAM200BP0CF97 657 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 YBX3P16989 372 aaKnown RBP eCLIP12.22□□□□□ -0.456e-8■□□□□ 9.3
USP1-201ENST00000339950 ABL2P42684 1182 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 RTP1P59025 263 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 MOGSQ13724 837 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 STILQ15468 1287 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 ANO7Q6IWH7 933 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 NOTUMQ6P988 496 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 PQLC3Q8N755 202 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 CXorf38Q8TB03 319 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 DENND1AQ8TEH3 1009 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 INPP5DQ92835 1189 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TNIP3Q96KP6 325 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 WDR83Q9BRX9 315 aaKnown RBP12.22□□□□□ -0.45
USP1-201ENST00000339950 PDHXO00330 501 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TGFB3P10600 412 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 LAMC2Q13753 1193 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 FLOT2Q14254 428 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 PDK2Q15119 407 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TAF12Q16514 161 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 ARL13BQ3SXY8 428 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 TLDC1Q6P9B6 456 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 CAND1Q86VP6 1230 aaKnown RBP12.22□□□□□ -0.45
USP1-201ENST00000339950 TMPRSS6Q8IU80 811 aa12.22□□□□□ -0.45
USP1-201ENST00000339950 ZNF781Q8N8C0 355 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms