RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FGF10O15520 208 aaPredicted RBP13.76□□□□□ -0.21
HMGB1-202ENST00000339872 TLR5O60602 858 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 AVILO75366 819 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 ABLIM3O94929 683 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 HOXC13P31276 330 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 GARSP41250 739 aaKnown RBP13.76□□□□□ -0.21
HMGB1-202ENST00000339872 GALNT2Q10471 571 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 WASHC5Q12768 1159 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 STAT4Q14765 748 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 C16orf59Q7L2K0 433 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 ZNF567Q8N184 647 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 ATP11CQ8NB49 1132 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 HDAC11Q96DB2 347 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 UBE2OQ9C0C9 1292 aaKnown RBP13.76□□□□□ -0.21
HMGB1-202ENST00000339872 CTNNAL1Q9UBT7 734 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 PRKAG2Q9UGJ0 569 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 CHMP2BQ9UQN3 213 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 CLUHO75153 1309 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 EXOC1LA0A1B0GW35 172 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 SLC12A8A0AV02 714 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 ZDHHC11BP0C7U3 371 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 TPSB2P20231 275 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 PPM1AP35813 382 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 FDFT1P37268 417 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 ELK3P41970 407 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 TUBP50607 506 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 SEMA5AQ13591 1074 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 TPSAB1Q15661 275 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 TPGS2Q68CL5 300 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 C14orf80Q86SX3 495 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 ATP6V0D2Q8N8Y2 350 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 CEP295NLQ96MC4 621 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 ZNF512Q96ME7 567 aaPredicted RBP13.76□□□□□ -0.21
HMGB1-202ENST00000339872 FRMD8Q9BZ67 464 aaPredicted RBP13.76□□□□□ -0.21
HMGB1-202ENST00000339872 BRD8Q9H0E9 1235 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 PSD3Q9NYI0 1048 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 KLHL8Q9P2G9 620 aaPredicted RBP13.76□□□□□ -0.21
HMGB1-202ENST00000339872 YIPF1Q9Y548 306 aa13.76□□□□□ -0.21
HMGB1-202ENST00000339872 CARNS1A5YM72 827 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 DFFAO00273 331 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 ZNF189O75820 626 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 AGTP01019 485 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 CAPN2P17655 700 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 EN2P19622 333 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 SSTR1P30872 391 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 CA8P35219 290 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 MLLT6P55198 1093 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 GPX6P59796 221 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 IFI35P80217 286 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 SKOR1P84550 965 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PPARDQ03181 441 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PPIGQ13427 754 aaKnown RBP eCLIP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 CCDC38Q502W7 563 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PALM2Q8IXS6 379 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 ARFGAP2Q8N6H7 521 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 C1orf74Q96LT6 269 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 STMN4Q9H169 189 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 MPP6Q9NZW5 540 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 SLC12A6Q9UHW9 1150 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 VANGL2Q9ULK5 521 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 ZMYND8Q9ULU4 1186 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PCDHB12Q9Y5F1 795 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 NYNRINQ9P2P1 1898 aaKnown RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PRRG1O14668 218 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 TCEA3O75764 348 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 FGBP02675 491 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PTPN3P26045 913 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PSMB4P28070 264 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PHBP35232 272 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 ALDH1A3P47895 512 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PPP2R2AP63151 447 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 NRG1Q02297 640 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 MS4A13Q5J8X5 152 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 ARTNQ5T4W7 220 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 TTC19Q6DKK2 380 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PID1Q7Z2X4 250 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 CAND1Q86VP6 1230 aaKnown RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 IGDCC3Q8IVU1 814 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 PDZD8Q8NEN9 1154 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 BADQ92934 168 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 BTN2A3PQ96KV6 586 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 CAPS2Q9BXY5 557 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 MRPL17Q9NRX2 175 aaKnown RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.75□□□□□ -0.21
HMGB1-202ENST00000339872 HSFX1Q9UBD0 423 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 DOCK4Q8N1I0 1966 aa13.75□□□□□ -0.21
HMGB1-202ENST00000339872 GJB5O95377 273 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 CSH1P0DML2 217 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 CSH2P0DML3 217 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 FPGSQ05932 587 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 RAB33AQ14088 237 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 TAF12Q16514 161 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 C3orf62Q6ZUJ4 267 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 MCUQ8NE86 351 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 ZBED2Q9BTP6 218 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 NACA2Q9H009 215 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 NDFIP2Q9NV92 336 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 TBK1Q9UHD2 729 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 TEX264Q9Y6I9 313 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 PLXNA4Q9HCM2 1894 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms