RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 GPAMQ9HCL2 828 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 COG5Q9UP83 839 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 GRIP1Q9Y3R0 1128 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 RGS14O43566 566 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 PROCP04070 461 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 IFNA6P05013 189 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 POLD2P49005 469 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 MAZP56270 477 aaKnown RBP13.09□□□□□ -0.31
USP47-202ENST00000339865 GOLGA7BQ2TAP0 167 aa13.09□□□□□ -0.31
USP47-202ENST00000339865 FAM240BA0A1B0GVZ2 78 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 G3V2T6 193 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 CPA3P15088 417 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 SKIV2L2P42285 1042 aaKnown RBP13.08□□□□□ -0.31
USP47-202ENST00000339865 GPR15P49685 360 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 CENPCQ03188 943 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 CARTPTQ16568 116 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 SYNPOQ8N3V7 929 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 ZNF276Q8N554 614 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 OR52L1Q8NGH7 329 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 OXER1Q8TDS5 423 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 PI4K2AQ9BTU6 479 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 LRRC4BQ9NT99 713 aa13.08□□□□□ -0.31
USP47-202ENST00000339865 EPN2O95208 641 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 ARPC4P59998 168 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 WASHC2DQ5SRD0 308 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 BROXQ5VW32 411 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 CYP20A1Q6UW02 462 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 TMEM179Q6ZVK1 233 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 STAP2Q9UGK3 403 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 CDH9Q9ULB4 789 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 TDRKHQ9Y2W6 561 aaKnown RBP13.08□□□□□ -0.32
USP47-202ENST00000339865 MAPK7Q13164 816 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 SNRNP35Q16560 246 aaKnown RBP13.08□□□□□ -0.32
USP47-202ENST00000339865 FNBP1LQ5T0N5 605 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 ANKRD26P1Q6NSI1 321 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 ZSWIM2Q8NEG5 633 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 TNFAIP8L1Q8WVP5 186 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 CCSER2Q9H7U1 834 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 ME2P23368 584 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 FAM131AQ6UXB0 335 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 PI16Q6UXB8 463 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.08□□□□□ -0.32
USP47-202ENST00000339865 DCAF4Q8WV16 495 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 GPN1Q9HCN4 374 aaPredicted RBP13.08□□□□□ -0.32
USP47-202ENST00000339865 HOXC10Q9NYD6 342 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 AP4E1Q9UPM8 1137 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 SPEF1Q9Y4P9 236 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 CFAP43Q8NDM7 1665 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 STXBP1P61764 594 aaKnown RBP13.08□□□□□ -0.32
USP47-202ENST00000339865 MADCAM1Q13477 382 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 GNA13Q14344 377 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 SLC9A4Q6AI14 798 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 ZNF554Q86TJ5 538 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 REXO5Q96IC2 774 aaKnown RBP13.08□□□□□ -0.32
USP47-202ENST00000339865 TTYH1Q9H313 450 aaPredicted RBP13.08□□□□□ -0.32
USP47-202ENST00000339865 HPF1Q9NWY4 346 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 KMOO15229 486 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 IL13P35225 146 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 S100A12P80511 92 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 MYBPC3Q14896 1274 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 PKN1Q16512 942 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 LRRC70Q7Z2Q7 622 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 ARMC8Q8IUR7 673 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 FBXO30Q8TB52 745 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 AHSPQ9NZD4 102 aa13.08□□□□□ -0.32
USP47-202ENST00000339865 FOXN1O15353 648 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 SEC22BO75396 215 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 CIAO1O76071 339 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 HPCAL1P37235 193 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 AMHR2Q16671 573 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 VPS35Q96QK1 796 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 APOL2Q9BQE5 337 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 INTS10Q9NVR2 710 aaKnown RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 PCCAP05165 728 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 MSL3P1P0C860 447 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 IFI30P13284 250 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 ACADSBP45954 432 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 PKNOX1P55347 436 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 XIAPP98170 497 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 TYSND1Q2T9J0 566 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 CST11Q9H112 138 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 KDM5BQ9UGL1 1544 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 RGS10O43665 173 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 SERPINA1P01009 418 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 ITGA9Q13797 1035 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 ARHGAP15Q53QZ3 475 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 MFSD7Q6UXD7 560 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 NSUN6Q8TEA1 469 aaKnown RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 ATG4AQ8WYN0 398 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 WDR12Q9GZL7 423 aaKnown RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 PLGRKTQ9HBL7 147 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 WHRNQ9P202 907 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 IFRD1O00458 451 aaPredicted RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 NMT2O60551 498 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 DBIP07108 87 aaKnown RBP13.07□□□□□ -0.32
USP47-202ENST00000339865 HLA-DQA1Q5Y7H0 255 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 AFTPHQ6ULP2 937 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 PLET1Q6UQ28 207 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 DEF8Q6ZN54 512 aa13.07□□□□□ -0.32
USP47-202ENST00000339865 ADGRF4Q8IZF3 695 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms