RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 AUHQ13825 339 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 FASTKD3Q14CZ7 662 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 VEPH1Q14D04 833 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 PRKD1Q15139 912 aaPredicted RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 TAF12Q16514 161 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ALFQ53S48 1182 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 RAP1GAP2Q684P5 730 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 NADSYN1Q6IA69 706 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 LILRA6Q6PI73 481 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ARHGAP36Q6ZRI8 547 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TFAP2DQ7Z6R9 452 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ZNF683Q8IZ20 524 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 HS6ST3Q8IZP7 471 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 MRPL43Q8N983 215 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 NAT8LQ8N9F0 302 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CCHCR1Q8TD31 782 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SLC22A17Q8WUG5 538 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TFB1MQ8WVM0 346 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 HTR3CQ8WXA8 447 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 IGSF8Q969P0 613 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 PSMG2Q969U7 264 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 LRRC45Q96CN5 670 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TBC1D31Q96DN5 1066 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 RTP4Q96DX8 246 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 P2RY11Q96G91 374 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 NACA2Q9H009 215 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CDC42EP4Q9H3Q1 356 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 CERS4Q9HA82 394 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 IL21Q9HBE4 155 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 RAB6BQ9NRW1 208 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SMPD4Q9NXE4 827 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TRPM5Q9NZQ8 1165 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 OGFRQ9NZT2 677 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SEPT10Q9P0V9 454 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 HSFX1Q9UBD0 423 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 NFS1Q9Y697 457 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 DOCK6Q96HP0 2047 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CFAP69A5D8W1 941 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CARNS1A5YM72 827 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ACSL3O95573 720 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 F11P03951 625 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 KLKB1P03952 638 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ADH1AP07327 375 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 C8AP07357 584 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 IRF1P10914 325 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SLC2A3P11169 496 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 OAS2P29728 719 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 HOXC13P31276 330 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SLC6A4P31645 630 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 PBX2P40425 430 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CBX1P83916 185 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CYP4F8P98187 520 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CAV1Q03135 178 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ZNF844Q08AG5 666 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 GALNT2Q10471 571 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 WASHC5Q12768 1159 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ZBTB17Q13105 803 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SLC29A2Q14542 456 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 PDK1Q15118 436 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 KYNUQ16719 465 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 MSS51Q4VC12 460 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 FNBP1LQ5T0N5 605 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 HECTD3Q5T447 861 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 STXBP5Q5T5C0 1151 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SNX30Q5VWJ9 437 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TXNDC8Q6A555 127 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 HEATR6Q6AI08 1181 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 FBXL22Q6P050 247 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 RFWD3Q6PCD5 774 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 GAREM2Q75VX8 874 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ARHGAP12Q8IWW6 846 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 PPIL6Q8IXY8 311 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CCDC13Q8IYE1 715 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 KRT222Q8N1A0 295 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ZCCHC9Q8N567 271 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 KREMEN2Q8NCW0 462 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 BBOF1Q8ND07 529 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TTC16Q8NEE8 873 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 PDZD8Q8NEN9 1154 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 MICAL1Q8TDZ2 1067 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 ARL8AQ96BM9 186 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TRMT2BQ96GJ1 504 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 BTN2A3PQ96KV6 586 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 C9orf72Q96LT7 481 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CEP295NLQ96MC4 621 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 RBM15Q96T37 977 aaKnown RBP eCLIP4.26□□□□□ -1.73
MCF2-201ENST00000338585 WDR83Q9BRX9 315 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 PABPC3Q9H361 631 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 NOL6Q9H6R4 1146 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 ETNK1Q9HBU6 452 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TRPC7Q9HCX4 862 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SAYSD1Q9NPB0 183 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 TLR9Q9NR96 1032 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 HCFC1R1Q9NWW0 138 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 DNMT3LQ9UJW3 386 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SHOC2Q9UQ13 582 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 YBX2Q9Y2T7 364 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 LAMA3Q16787 3333 aa4.25□□□□□ -1.73
MCF2-201ENST00000338585 ANAPC1Q9H1A4 1944 aa4.25□□□□□ -1.73
MCF2-201ENST00000338585 GBF1Q92538 1859 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms