RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CEP70Q8NHQ1 597 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 ARRDC3Q96B67 414 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 GPR78Q96P69 363 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 ABHD14AQ9BUJ0 271 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 EFHD1Q9BUP0 239 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 GATA5Q9BWX5 397 aaPredicted RBP3.75□□□□□ -1.81
HMGB1-201ENST00000326004 SLITRK6Q9H5Y7 841 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 RIC8AQ9NPQ8 531 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 SAGE1Q9NXZ1 904 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 RRN3Q9NYV6 651 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 PGAP2Q9UHJ9 254 aa3.75□□□□□ -1.81
HMGB1-201ENST00000326004 RRP7AQ9Y3A4 280 aaKnown RBP3.75□□□□□ -1.81
HMGB1-201ENST00000326004 MANSC4A6NHS7 340 aaPredicted RBP3.74□□□□□ -1.81
HMGB1-201ENST00000326004 GRM8O00222 908 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 INPPL1O15357 1258 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 NCAM2O15394 837 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 TSPAN3O60637 253 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 LATS1O95835 1130 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 TUBB4AP04350 444 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 RFPL3SP0C7P2 107 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 CHN1P15882 459 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 IDUAP35475 653 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 TLE2Q04725 743 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 ANXA2RQ3ZCQ2 193 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 ALFQ53S48 1182 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 MAP3K21Q5TCX8 1036 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 KIAA1614Q5VZ46 1190 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 ANO7Q6IWH7 933 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 ZNF474Q6S9Z5 364 aaPredicted RBP3.74□□□□□ -1.81
HMGB1-201ENST00000326004 ZNF782Q6ZMW2 699 aaPredicted RBP3.74□□□□□ -1.81
HMGB1-201ENST00000326004 LRRTM4Q86VH4 590 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 ADGRF3Q8IZF5 1079 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 FAM47BQ8NA70 645 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 OSR1Q8TAX0 266 aaPredicted RBP3.74□□□□□ -1.81
HMGB1-201ENST00000326004 BCAS4Q8TDM0 211 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 CLEC4CQ8WTT0 213 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 ZFPM2Q8WW38 1151 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 HERVK_113Q902F9 699 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 KAT2BQ92831 832 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 TBATAQ96M53 351 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 COG8Q96MW5 612 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 FCRL5Q96RD9 977 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 TWNKQ96RR1 684 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 FAM118BQ9BPY3 351 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 PLEKHA2Q9HB19 425 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 FLRT1Q9NZU1 646 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 C11orf21Q9P2W6 132 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 GJD2Q9UKL4 321 aa3.74□□□□□ -1.81
HMGB1-201ENST00000326004 SETD1BQ9UPS6 1966 aaKnown RBP3.74□□□□□ -1.81
HMGB1-201ENST00000326004 LMTK3Q96Q04 1460 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 WIPF3A6NGB9 483 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 RRHO14718 337 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 DSCR3O14972 297 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 EIF5BO60841 1220 aaKnown RBP3.73□□□□□ -1.81
HMGB1-201ENST00000326004 RBMXL2O75526 392 aaKnown RBP3.73□□□□□ -1.81
HMGB1-201ENST00000326004 PLAUP00749 431 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 ALDOCP09972 364 aaKnown RBP3.73□□□□□ -1.81
HMGB1-201ENST00000326004 CKMT1AP12532 417 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 PEPDP12955 493 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 TFEBP19484 476 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 RPS6KB1P23443 525 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 CD38P28907 300 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 SOX2P48431 317 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 OAZ1P54368 228 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 SLC12A2P55011 1212 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 SHC2P98077 582 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 UBE3AQ05086 875 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 CDK18Q07002 472 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 SLC12A1Q13621 1099 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 THOC5Q13769 683 aaKnown RBP3.73□□□□□ -1.81
HMGB1-201ENST00000326004 ZNF268Q14587 947 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-201ENST00000326004 ZNF484Q5JVG2 852 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 MEX3CQ5U5Q3 659 aaKnown RBP3.73□□□□□ -1.81
HMGB1-201ENST00000326004 DHRS13Q6UX07 377 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 SYNE3Q6ZMZ3 975 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 RBM44Q6ZP01 1051 aaKnown RBP3.73□□□□□ -1.81
HMGB1-201ENST00000326004 BBS12Q6ZW61 710 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 TFAP2DQ7Z6R9 452 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 UBE2Q1Q7Z7E8 422 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 RHPN2Q8IUC4 686 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 GALNT16Q8N428 558 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 ANKRD44Q8N8A2 993 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 OR52N4Q8NGI2 321 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.73□□□□□ -1.81
HMGB1-201ENST00000326004 PIGKQ92643 395 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 MAP4K1Q92918 833 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 ATP2A3Q93084 1043 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 C5orf34Q96MH7 638 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 TM2D2Q9BX73 214 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 SLC22A11Q9NSA0 550 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 MTMR4Q9NYA4 1195 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 PDP2Q9P2J9 529 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 RCE1Q9Y256 329 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 DNAJC16Q9Y2G8 782 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 CC2D2AQ9P2K1 1620 aa3.73□□□□□ -1.81
HMGB1-201ENST00000326004 WDR17Q8IZU2 1322 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 RB1CC1Q8TDY2 1594 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 RRN3P2A6NIE6 340 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 MCIDASD6RGH6 385 aa3.72□□□□□ -1.81
HMGB1-201ENST00000326004 STX16-NPEPL1H3BU86 382 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms