RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MAMLD1Q13495 774 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 SPRED3Q2MJR0 410 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 AASDHQ4L235 1098 aaPredicted RBP15.71■□□□□ 0.11
SHH-201ENST00000297261 C4orf22Q6V702 233 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 ZCCHC7Q8N3Z6 543 aaKnown RBP15.71■□□□□ 0.11
SHH-201ENST00000297261 PPHLN1Q8NEY8 458 aaKnown RBP15.71■□□□□ 0.11
SHH-201ENST00000297261 IFT43Q96FT9 208 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 SEPHS2Q99611 448 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 GPR20Q99678 358 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 CNPY3Q9BT09 278 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 NAT9Q9BTE0 207 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 RNPEPQ9H4A4 650 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 DPP3Q9NY33 737 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 ZNF839A8K0R7 811 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 EEF2KO00418 725 aaKnown RBP15.71■□□□□ 0.11
SHH-201ENST00000297261 VCLP18206 1134 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 ICAM3P32942 547 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 PTGIRP43119 386 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 MAP3K10Q02779 954 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 UBE3AQ05086 875 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 DMC1Q14565 340 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 EML3Q32P44 896 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 FBXW8Q8N3Y1 598 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 VCPIP1Q96JH7 1222 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 DNAJC1Q96KC8 554 aaKnown RBP15.71■□□□□ 0.11
SHH-201ENST00000297261 SYT15Q9BQS2 421 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 TMCO1Q9UM00 188 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 DOLKQ9UPQ8 538 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 LY75O60449 1722 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 UMODL1Q5DID0 1318 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 A0A087WXM4 84 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 WDR27A2RRH5 827 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 ATP6V1G1O75348 118 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 APOA4P06727 396 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 CNTFP26441 200 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 RBL1P28749 1068 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 PTPN7P35236 360 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 PSEN1P49768 467 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 SCNN1BP51168 640 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 RAP1GDS1P52306 607 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 KCNK10P57789 538 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 RBBP7Q16576 425 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 RINLQ6ZS11 566 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 KBTBD2Q8IY47 623 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 ALLCQ8N6M5 410 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 EPAS1Q99814 870 aa15.71■□□□□ 0.11
SHH-201ENST00000297261 LYPLA1O75608 230 aaPredicted RBP15.7■□□□□ 0.1
SHH-201ENST00000297261 TNFSF9P41273 254 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 CDK7P50613 346 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 CRADDP78560 199 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 SP2Q02086 613 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 SREBF2Q12772 1141 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 BFSP2Q13515 415 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 PLPPR4Q7Z2D5 763 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 TRIM74Q86UV6 250 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 TRIM73Q86UV7 250 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 FAM131BQ86XD5 332 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 KLHL23Q8NBE8 558 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.7■□□□□ 0.1
SHH-201ENST00000297261 L3MBTL3Q96JM7 780 aaPredicted RBP15.7■□□□□ 0.1
SHH-201ENST00000297261 SLITRK1Q96PX8 696 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 EGFL8Q99944 293 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 MRGBPQ9NV56 204 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 ADGRA2Q96PE1 1338 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 A0A096LPK6 155 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 H0YGN5 161 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 NR5A2O00482 541 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 TIMM44O43615 452 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 HOXD13P35453 343 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 GNL1P36915 607 aaPredicted RBP15.7■□□□□ 0.1
SHH-201ENST00000297261 CPNE8Q86YQ8 564 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 FAM136AQ96C01 138 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 ZNF518BQ9C0D4 1074 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 PLEKHA5Q9HAU0 1116 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 MAFBQ9Y5Q3 323 aaPredicted RBP15.7■□□□□ 0.1
SHH-201ENST00000297261 NFS1Q9Y697 457 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 INPP4BO15327 924 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 AVILO75366 819 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 PMPCBO75439 489 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 AMPD1P23109 780 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 MIPP30301 263 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 GOLGA7BQ2TAP0 167 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 SLFN11Q7Z7L1 901 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 ZNF333Q96JL9 665 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 ST6GALNAC4Q9H4F1 302 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 LRRC40Q9H9A6 602 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 WDR41Q9HAD4 459 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 DMAC2Q9NW81 257 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 UBP1Q9NZI7 540 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 ACOT9Q9Y305 439 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 TCRBV9S1A1TA0A576 114 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 C17orf102A2RUQ5 167 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 FASP25445 335 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 FDFT1P37268 417 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 TDRD10Q5VZ19 366 aaKnown RBP15.7■□□□□ 0.1
SHH-201ENST00000297261 UTS2BQ765I0 119 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 TLK2Q86UE8 772 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 HPS6Q86YV9 775 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.7■□□□□ 0.1
SHH-201ENST00000297261 SHCBP1Q8NEM2 672 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms