RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 CCDC28BQ9BUN5 200 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 EPB41L4AQ9HCS5 686 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 VPS28Q9UK41 221 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CCDC182A6NF36 153 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CYP2A6P11509 494 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 AKAP5P24588 427 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 EPHB3P54753 998 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 GIT2Q14161 759 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 EZH2Q15910 746 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 NFE2Q16621 373 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 KLHL24Q6TFL4 600 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 LZTR1Q8N653 840 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 B3GALNT2Q8NCR0 500 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SNX8Q9Y5X2 465 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CNTNAP4Q9C0A0 1308 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SMIM22K7EJ46 135 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CYB561D2O14569 222 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 INPP4BO15327 924 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 RGS14O43566 566 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 C6orf222P0C671 652 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SUPT20HL2P0C7V6 817 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 PAICSP22234 425 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 NME5P56597 212 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CDC42P60953 191 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SREBF2Q12772 1141 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ZNF57Q68EA5 555 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 DENND6AQ8IWF6 608 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ROGDIQ9GZN7 287 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 BARX2Q9UMQ3 279 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 PSMD12O00232 456 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 MAPKAPK2P49137 400 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 RPL14P50914 215 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ADARP55265 1226 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 PTPN11Q06124 597 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 TSHZ1Q6ZSZ6 1077 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 FBXO33Q7Z6M2 555 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 KATNAL2Q8IYT4 538 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 DHRSXQ8N5I4 330 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 EHD4Q9H223 541 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 REEP1Q9H902 201 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 A0A087WZ62 844 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ABLIM1O14639 778 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 CAPN1P07384 714 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 LBPP18428 481 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 INTS11Q5TA45 600 aaKnown RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 PRR5LQ6MZQ0 368 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 NEK6Q9HC98 313 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 TRIM39Q9HCM9 518 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 HPSEQ9Y251 543 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 DIP2BQ9P265 1576 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 MYH1P12882 1939 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 MYH2Q9UKX2 1941 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 MYH4Q9Y623 1939 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 BCLAF3A2AJT9 711 aaKnown RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ABHD2P08910 425 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 MBL2P11226 248 aaPredicted RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ST3GAL1Q11201 340 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 SCARF1Q14162 830 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 MFSD4BQ5TF39 518 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 NT5DC1Q5TFE4 455 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 CLYBLQ8N0X4 340 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 FNIP1Q8TF40 1166 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 UBASH3BQ8TF42 649 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 PNPLA3Q9NST1 481 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 NAALADL1Q9UQQ1 740 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 CTDNEP1O95476 244 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 GSTM5P46439 218 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 NEDD8Q15843 81 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 AGBL3Q8NEM8 1001 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 SMARCD1Q96GM5 515 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 RERGLQ9H628 205 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 TLR8Q9NR97 1041 aaKnown RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 BTBD3Q9Y2F9 522 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ICE1Q9Y2F5 2266 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ASTN2O75129 1339 aaPredicted RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 MRASO14807 208 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 AREL1O15033 823 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 NKRFO15226 690 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 FGF10O15520 208 aaPredicted RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 CAMTA2O94983 1202 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 KCNH1O95259 989 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 PSMG1O95456 288 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 PTPN3P26045 913 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 TCF7P36402 384 aaPredicted RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 EPC2Q52LR7 807 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 MRPS31Q92665 395 aaKnown RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 A1CFQ9NQ94 594 aaKnown RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 RTN3O95197 1032 aaPredicted RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 CTSHP09668 335 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 FDPSP14324 419 aaKnown RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 SLC2A4P14672 509 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ITGAXP20702 1163 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 RGS21Q2M5E4 152 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 TYW3Q6IPR3 259 aaKnown RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ZNF280DQ6N043 979 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 MED8Q96G25 268 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 RIBC2Q9H4K1 309 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ZNF624Q9P2J8 865 aaPredicted RBP8.13□□□□□ -1.11
LIMD1-201ENST00000273317 ANAPC2Q9UJX6 822 aa8.13□□□□□ -1.11
LIMD1-201ENST00000273317 RWDD3Q9Y3V2 267 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms