RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DENND1CQ8IV53 801 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 CALML6Q8TD86 181 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 SKA2Q8WVK7 121 aaPredicted RBP11.89□□□□□ -0.51
VPS4A-201ENST00000254950 PTPRN2Q92932 1015 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 LGMNQ99538 433 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 SLC38A8A6NNN8 435 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 CHADO15335 359 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 RIPK2O43353 540 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 SOAT2O75908 522 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 IL1R2P27930 398 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 HTR7P34969 479 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 SPRP35270 261 aaPredicted RBP11.89□□□□□ -0.51
VPS4A-201ENST00000254950 ELK3P41970 407 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 NUMBP49757 651 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 ATXN1P54253 815 aaKnown RBP11.89□□□□□ -0.51
VPS4A-201ENST00000254950 HDAC4P56524 1084 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 CLLU1OSQ5K130 101 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 C6orf163Q5TEZ5 329 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 RAB44Q7Z6P3 723 aaPredicted RBP11.89□□□□□ -0.51
VPS4A-201ENST00000254950 TTC8Q8TAM2 541 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 GANCQ8TET4 914 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 NTAN1Q96AB6 310 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 FICDQ9BVA6 458 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 MLXIPLQ9NP71 852 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 ARHGEF4Q9NR80 690 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 FBXW11Q9UKB1 542 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 ERI2A8K979 691 aaKnown RBP11.89□□□□□ -0.51
VPS4A-201ENST00000254950 SERPINF2P08697 491 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 DSC3Q14574 896 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 DDX53Q86TM3 631 aaKnown RBP11.89□□□□□ -0.51
VPS4A-201ENST00000254950 CCDC197Q8NCU1 140 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 IGSF21Q96ID5 467 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 SLC13A1Q9BZW2 595 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 ETNK1Q9HBU6 452 aa11.89□□□□□ -0.51
VPS4A-201ENST00000254950 MYH10P35580 1976 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SPAG7O75391 227 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SYN1P17600 705 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 CHKAP35790 457 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 MAGEA11P43364 429 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 RHOAP61586 193 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 DPYSL2Q16555 572 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 DCAF12L1Q5VU92 463 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 ATG16L1Q676U5 607 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 TXNRD3NBQ6F5E7 133 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 TTC27Q6P3X3 843 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 ALKAL1Q6UXT8 129 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 COLGALT2Q8IYK4 626 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 ATXN7L3BQ96GX2 97 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 GPR62Q9BZJ7 368 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 IRAK2O43187 625 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 LRIG2O94898 1065 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 MGAT3Q09327 533 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 CDH17Q12864 832 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 HIC1Q14526 733 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 CYP1B1Q16678 543 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SPDYCQ5MJ68 293 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 HFE2Q6ZVN8 426 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 PRUNE1Q86TP1 453 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 UBR7Q8N806 425 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 EPS8L3Q8TE67 593 aaKnown RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 ART4Q93070 314 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 LRRC39Q96DD0 335 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 DYRK4Q9NR20 520 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 NINJ2Q9NZG7 142 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 UBA2Q9UBT2 640 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SEPT3Q9UH03 358 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 CYTH4Q9UIA0 394 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 FZD10Q9ULW2 581 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 MRPS23Q9Y3D9 190 aaKnown RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 UBA6A0AVT1 1052 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 GOLGA8RI6L899 631 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 CYP11A1P05108 521 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 TCF4P15884 667 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 AFF1P51825 1210 aaKnown RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 LHX8Q68G74 356 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 DRICH1Q6PGQ1 229 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SPATS2Q86XZ4 545 aaKnown RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 PYROXD2Q8N2H3 581 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 PCDH19Q8TAB3 1148 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 OGDHLQ9ULD0 1010 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 HBS1LQ9Y450 684 aaKnown RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 MTMR11A4FU01 709 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SOD2P04179 222 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 S100BP04271 92 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 MMP13P45452 471 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 TRIP4Q15650 581 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 DPY19L2P1Q6NXN4 242 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 C4orf33Q8N1A6 199 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 MREGQ8N565 214 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 GPATCH11Q8N954 259 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 TSEN2Q8NCE0 465 aaKnown RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 OR10T2Q8NGX3 314 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 ARL8AQ96BM9 186 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 TCF25Q9BQ70 676 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 C11orf84Q9BUA3 381 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SLC28A3Q9HAS3 691 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 IL23AQ9NPF7 189 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 MPP6Q9NZW5 540 aa11.88□□□□□ -0.51
VPS4A-201ENST00000254950 SLC24A2Q9UI40 661 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms