RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 RAP1GDS1P52306 607 aa12.27□□□□□ -0.44
USHBP1-201ENST00000252597 BOLA3Q53S33 107 aa12.27□□□□□ -0.44
USHBP1-201ENST00000252597 KRT80Q6KB66 452 aa12.27□□□□□ -0.44
USHBP1-201ENST00000252597 RNF111Q6ZNA4 994 aa12.27□□□□□ -0.44
USHBP1-201ENST00000252597 AMIGO2Q86SJ2 522 aa12.27□□□□□ -0.44
USHBP1-201ENST00000252597 RYBPQ8N488 228 aaPredicted RBP12.27□□□□□ -0.44
USHBP1-201ENST00000252597 NAT14Q8WUY8 206 aa12.27□□□□□ -0.44
USHBP1-201ENST00000252597 MRPL45Q9BRJ2 306 aaKnown RBP12.27□□□□□ -0.44
USHBP1-201ENST00000252597 DPEP3Q9H4B8 488 aa12.27□□□□□ -0.44
USHBP1-201ENST00000252597 TCF7L2Q9NQB0 619 aa12.27□□□□□ -0.44
USHBP1-201ENST00000252597 TCRBV5S1A1TA0A578 114 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 C2CD4BA6NLJ0 364 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 TMEM233B4DJY2 109 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 ZBTB14O43829 449 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 FOXD2O60548 495 aaPredicted RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 PLIN3O60664 434 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 STAMBPO95630 424 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 ITGAXP20702 1163 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 RPL10P27635 214 aaKnown RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 ABCE1P61221 599 aaKnown RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 LRRC43Q8N309 656 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 MAPK15Q8TD08 544 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 TFB1MQ8WVM0 346 aaKnown RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 HTR3CQ8WXA8 447 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 SREK1Q8WXA9 508 aaKnown RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 SIGLEC10Q96LC7 697 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 DMAP1Q9NPF5 467 aaPredicted RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 GGA3Q9NZ52 723 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 SIRPGQ9P1W8 387 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 FAF1Q9UNN5 650 aaPredicted RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 RGPD3A6NKT7 1758 aaPredicted RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 RGPD4Q7Z3J3 1758 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 A0A1B0GTW7 788 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 XRCC1P18887 633 aaPredicted RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 CRHR1P34998 444 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 GARSP41250 739 aaKnown RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 CHN2P52757 468 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 PITX1P78337 314 aaPredicted RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 SEPT6Q14141 434 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 PITRM1Q5JRX3 1037 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 DCUN1D1Q96GG9 259 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 CELF6Q96J87 481 aaKnown RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 PCYT2Q99447 389 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 FERMT1Q9BQL6 677 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 CXCL16Q9H2A7 254 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 SNX15Q9NRS6 342 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 RPL26L1Q9UNX3 145 aaKnown RBP12.27□□□□□ -0.45
USHBP1-201ENST00000252597 SNX13Q9Y5W8 968 aa12.27□□□□□ -0.45
USHBP1-201ENST00000252597 ATP6AP2A0A1C7CYW4 349 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 F8W8V4 182 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 ATP6AP2O75787 350 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 HNRNPCP07910 306 aaKnown RBP eCLIP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 HDCP19113 662 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 SULT1E1P49888 294 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 WASHC5Q12768 1159 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 RALGDSQ12967 914 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 KLF10Q13118 480 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 USP10Q14694 798 aaKnown RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 FSCBQ5H9T9 825 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 CERCAMQ5T4B2 595 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 FBXL19Q6PCT2 694 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 IFNEQ86WN2 208 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 AGBL3Q8NEM8 1001 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 NR1H4Q96RI1 486 aaPredicted RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 MED10Q9BTT4 135 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 SIK2Q9H0K1 926 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 DPP3Q9NY33 737 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 AURKCQ9UQB9 309 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 AP4B1Q9Y6B7 739 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 NFKBIEO00221 500 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 ARIH2O95376 493 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 PIGNO95427 931 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 IQCF3P0C7M6 154 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 FGF3P11487 239 aaPredicted RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 TGM2P21980 687 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 AKAP5P24588 427 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 ARL1P40616 181 aaPredicted RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 CASP2P42575 452 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 THOP1P52888 689 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 TLR1Q15399 786 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 KIZQ2M2Z5 673 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 MAP7D1Q3KQU3 841 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 RARS2Q5T160 578 aaKnown RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 IER5Q5VY09 327 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 ZPBP2Q6X784 338 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 PCDHAC1Q9H158 963 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 ZNF408Q9H9D4 720 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 AS3MTQ9HBK9 375 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 PDGFCQ9NRA1 345 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 CACNG4Q9UBN1 327 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 FARP2O94887 1054 aaPredicted RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 TXNP10599 105 aaKnown RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 VDRP11473 427 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 CYP3A5P20815 502 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 ARRB2P32121 409 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 GMPSP49915 693 aaPredicted RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 SERPINB9P50453 376 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 CLDN10P78369 228 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 MSLNQ13421 630 aaPredicted RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms