RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 SP7Q8TDD2 431 aaPredicted RBP20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 HERVK_113Q902F9 699 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 MYRFLQ96LU7 910 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ZNF512Q96ME7 567 aaPredicted RBP20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 RAD54BQ9Y620 910 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SLC4A7Q9Y6M7 1214 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 PRRG1O14668 218 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ACSL3O95573 720 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 TTC4O95801 387 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 IGLV3-27P01718 113 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 HPDP32754 393 aaPredicted RBP20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 HTR7P34969 479 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 MDH1P40925 334 aaKnown RBP20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 MLLT6P55198 1093 aaPredicted RBP20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 NRG1Q02297 640 aaPredicted RBP20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 KCNJ11Q14654 390 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SNX30Q5VWJ9 437 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 PDZD8Q8NEN9 1154 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 OVCA2Q8WZ82 227 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 P2RY11Q96G91 374 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 C1orf74Q96LT6 269 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 RXFP1Q9HBX9 757 aa20.25■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ZNF840PA6NDX5 716 aa20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 NCAM2O15394 837 aa20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 APOEP02649 317 aa20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CNPP09543 421 aaKnown RBP20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 LSP1P33241 339 aa20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 KYNUQ16719 465 aa20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ZNF276Q8N554 614 aa20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 KLC2Q9H0B6 622 aa20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 BCCIPQ9P287 314 aaKnown RBP eCLIP20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 GBF1Q92538 1859 aa20.24■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SLC12A8A0AV02 714 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 E9PAM4 449 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SMAPO00193 183 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 TLL1O43897 1013 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ATP2A2P16615 1042 aaKnown RBP20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ELF1P32519 619 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CCT5P48643 541 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 EIF3BP55884 814 aaKnown RBP20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 TWF1Q12792 350 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 HIF1AQ16665 826 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 KRT71Q3SY84 523 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SYCP2LQ5T4T6 812 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 FAXCQ5TGI0 409 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CEP128Q6ZU80 1094 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 C14orf80Q86SX3 495 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 TBC1D31Q96DN5 1066 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 TRMT2BQ96GJ1 504 aaKnown RBP20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 C9orf72Q96LT7 481 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 NINJ2Q9NZG7 142 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 NOVA2Q9UNW9 492 aaKnown RBP20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 RRP15Q9Y3B9 282 aaKnown RBP20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 INSL5Q9Y5Q6 135 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CHADO15335 359 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 FGF10O15520 208 aaPredicted RBP20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 MAGEA4P43358 317 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CREMQ03060 361 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 RING1Q06587 406 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 IFFO1Q0D2I5 559 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 GALNT2Q10471 571 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 FASTKD3Q14CZ7 662 aaKnown RBP20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 MS4A13Q5J8X5 152 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 HDAC11Q96DB2 347 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 BTN2A3PQ96KV6 586 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CDK5RAP1Q96SZ6 601 aaKnown RBP20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SAYSD1Q9NPB0 183 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SLC12A6Q9UHW9 1150 aa20.23■□□□□ 0.83
TNFRSF1A-201ENST00000162749 A0A0A0MRY4 1105 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 RNF103O00237 685 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 METTL18O95568 372 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CA8P35219 290 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 GARSP41250 739 aaKnown RBP20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 PPIDQ08752 370 aaKnown RBP20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 VEPH1Q14D04 833 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ANKRD20A2Q5SQ80 823 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ANKRD20A1Q5TYW2 823 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ANKRD20A3Q5VUR7 823 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 C4orf22Q6V702 233 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 UHMK1Q8TAS1 419 aaKnown RBP20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 PHOSPHO2Q8TCD6 241 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SPATA13Q96N96 652 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CATSPERBQ9H7T0 1116 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ETNK1Q9HBU6 452 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 VANGL2Q9ULK5 521 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ZMYND8Q9ULU4 1186 aaPredicted RBP20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 HMBSP08397 361 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SPATA31D3P0C874 917 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 MX2P20592 715 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ATP5C1P36542 298 aaKnown RBP20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 TUBP50607 506 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 WASHC5Q12768 1159 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 PLD1Q13393 1074 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 TAF12Q16514 161 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 SPATA31D4Q6ZUB0 917 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CENPUQ71F23 418 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ZNF683Q8IZ20 524 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 ATP6V0D2Q8N8Y2 350 aa20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CELF6Q96J87 481 aaKnown RBP20.22■□□□□ 0.83
TNFRSF1A-201ENST00000162749 CEP41Q9BYV8 373 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms