RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 RNASE9P60153 205 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 RING1Q06587 406 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 FOXC1Q12948 553 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 CDH18Q13634 790 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 VWA3BQ502W6 1294 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 MS4A13Q5J8X5 152 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 SYCP2LQ5T4T6 812 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 OR6B2Q6IFH4 312 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 FAM183BPQ6ZVS7 135 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 TMEM110Q86TL2 294 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 AHI1Q8N157 1196 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 ZCCHC9Q8N567 271 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 HJURPQ8NCD3 748 aaPredicted RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 C1orf131Q8NDD1 294 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 CEP76Q8TAP6 659 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 GANCQ8TET4 914 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 STK32AQ8WU08 396 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 SHC3Q92529 594 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 SNX19Q92543 992 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 RNF34Q969K3 372 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 SLC39A13Q96H72 371 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 SERPINB11Q96P15 392 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 TUBGCP2Q9BSJ2 902 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 NUP62CLQ9H1M0 184 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 TMEM245Q9H330 911 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 THAP9Q9H5L6 903 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 FAM204AQ9H8W3 233 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 POPDC2Q9HBU9 364 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 CAPN10Q9HC96 672 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 PRSS16Q9NQE7 514 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 SAMSN1Q9NSI8 373 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 DDIT4Q9NX09 232 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 WSB2Q9NYS7 404 aaPredicted RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 USP36Q9P275 1121 aaKnown RBP10.67□□□□□ -0.7
SCN1A-222ENST00000642141 CEP83Q9Y592 693 aa10.67□□□□□ -0.7
SCN1A-222ENST00000642141 FRYQ5TBA9 3013 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 SPAARA0A1B0GVQ0 90 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 H0Y626 953 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 ARHGAP33O14559 1287 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 IRAK2O43187 625 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 APOEP02649 317 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 ERBB2P04626 1255 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 TACR2P21452 398 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 ACSL1P33121 698 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 CLCN1P35523 988 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 KRT9P35527 623 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 GGCXP38435 758 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 ZNF445P59923 1031 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 RPS14P62263 151 aaKnown RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 PTK2Q05397 1052 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 ZNF252P-AS1Q0IIN9 211 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 NME3Q13232 169 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 CAMK2GQ13555 558 aaPredicted RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 RAPGEF1Q13905 1077 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 MAN2A1Q16706 1144 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 MIIPQ5JXC2 388 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 WDR45BQ5MNZ6 344 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 DCAF12L1Q5VU92 463 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 TAF3Q5VWG9 929 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 PEAR1Q5VY43 1037 aaPredicted RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 KIAA0907Q7Z7F0 614 aaPredicted RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 CHSY1Q86X52 802 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 CCDC117Q8IWD4 279 aaPredicted RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 DHX40Q8IX18 779 aaKnown RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 DEFB106AQ8N104 65 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 HDDC3Q8N4P3 179 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 MINDY1Q8N5J2 469 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 OR2T3Q8NH03 318 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 FIBINQ8TAL6 211 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 WFIKKN2Q8TEU8 576 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 LMLNQ96KR4 655 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 RPL10LQ96L21 214 aaKnown RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 CAMK1GQ96NX5 476 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 DDX50Q9BQ39 737 aaKnown RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 NUP58Q9BVL2 599 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 LHX5Q9H2C1 402 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 NDST4Q9H3R1 872 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 C6orf106Q9H6K1 298 aaPredicted RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 SYNCQ9H7C4 482 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 EIF2B4Q9UI10 523 aaKnown RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 ANGPTL2Q9UKU9 493 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 INTS6Q9UL03 887 aaKnown RBP10.66□□□□□ -0.7
SCN1A-222ENST00000642141 SLCO1B1Q9Y6L6 691 aa10.66□□□□□ -0.7
SCN1A-222ENST00000642141 ADAMTS9Q9P2N4 1935 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 TYW5A2RUC4 315 aaKnown RBP10.65□□□□□ -0.7
SCN1A-222ENST00000642141 GTPBP10A4D1E9 387 aaKnown RBP10.65□□□□□ -0.7
SCN1A-222ENST00000642141 FAM47DPA6NHR8 397 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 TTC34A8MYJ7 566 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 GNSP15586 552 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 PMLP29590 882 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 OXTRP30559 389 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 ANP32AP39687 249 aaKnown RBP10.65□□□□□ -0.7
SCN1A-222ENST00000642141 FAM193AP78312 1265 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 CDK17Q00537 523 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 KCNMA1Q12791 1236 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 KCNJ12Q14500 433 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 DRAP1Q14919 205 aaPredicted RBP10.65□□□□□ -0.7
SCN1A-222ENST00000642141 C2CD6Q53TS8 623 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 MPP7Q5T2T1 576 aa10.65□□□□□ -0.7
SCN1A-222ENST00000642141 METTL3Q86U44 580 aaKnown RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms