RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SLKQ9H2G2 1235 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 SLC12A5Q9H2X9 1139 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 TMX1Q9H3N1 280 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 GAREM1Q9H706 876 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 CATSPERBQ9H7T0 1116 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 SPC25Q9HBM1 224 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 TCF7L1Q9HCS4 588 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 PCDH12Q9NPG4 1184 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 CCDC177Q9NQR7 707 aaPredicted RBP0.63□□□□□ -2.31
VPS35-212ENST00000640313 SLC5A4Q9NY91 659 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 STEAP1Q9UHE8 339 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 COL4A3BPQ9Y5P4 624 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 CDY1Q9Y6F8 540 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 EMSYQ7Z589 1322 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 WASHC2CQ9Y4E1 1318 aa0.63□□□□□ -2.31
VPS35-212ENST00000640313 SAA2-SAA4A0A096LPE2 208 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 SHTN1A0MZ66 631 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 MAGEA13PA6NCF6 341 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 A6NNZ2 444 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 TTC34A8MYJ7 566 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 FOXO6A8MYZ6 492 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ALG1L2C9J202 215 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 MS4A18H0YCH9 400 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 AGPSO00116 658 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 RHODO00212 210 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 P2RY10O00398 339 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 CA12O43570 354 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 KCNJ13O60928 360 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 SRGAP2O75044 1071 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 SRSF10O75494 262 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 FTLP02792 175 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 PARP1P09874 1014 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 MYBL2P10244 700 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 CPEP16870 476 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 CBLP22681 906 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 SP100P23497 879 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 DGKAP23743 735 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ITGB8P26012 769 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 CIITAP33076 1130 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 VPS41P49754 854 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 HSD17B4P51659 736 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 GUCY2FP51841 1108 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 MAP2K6P52564 334 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ARFIP2P53365 341 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 MCL1Q07820 350 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 PPIGQ13427 754 aaKnown RBP eCLIP0.62□□□□□ -2.31
VPS35-212ENST00000640313 FAM50AQ14320 339 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 PLS1Q14651 629 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 CLCA4Q14CN2 919 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ACAP2Q15057 778 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 UAP1L1Q3KQV9 507 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 KRTAP21-2Q3LI59 83 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ACCSLQ4AC99 568 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 GLE1Q53GS7 698 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 CT47A1Q5JQC4 288 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 KHDC1LQ5JSQ8 128 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 NAPEPLDQ6IQ20 393 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 HMBOX1Q6NT76 420 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 SWSAP1Q6NVH7 229 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 PGM2L1Q6PCE3 622 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ZNF474Q6S9Z5 364 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 B3GNT9Q6UX72 402 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 GDPD4Q6W3E5 623 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 USP49Q70CQ1 688 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 USP45Q70EL2 814 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ZNF367Q7RTV3 350 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 CATIPQ7Z7H3 387 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 FJX1Q86VR8 437 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 RHPN2Q8IUC4 686 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 RAVER1Q8IY67 606 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 SLC15A4Q8N697 577 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ANKRD44Q8N8A2 993 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 PJA1Q8NG27 643 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 PLBD2Q8NHP8 589 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 SPATA20Q8TB22 786 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 LRRC8CQ8TDW0 803 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 MAML1Q92585 1016 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 USP13Q92995 863 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 CD101Q93033 1021 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 HPS3Q969F9 1004 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 MTMR8Q96EF0 704 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 BICD1Q96G01 975 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 PRR11Q96HE9 360 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 ZNF845Q96IR2 970 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 ADGRG7Q96K78 797 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ZNF599Q96NL3 588 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 SMAD5Q99717 465 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 WDR77Q9BQA1 342 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 SORBS1Q9BX66 1292 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 RHOBTB2Q9BYZ6 727 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 GTPBP4Q9BZE4 634 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 DPH1Q9BZG8 443 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 MS4A7Q9GZW8 240 aaPredicted RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 EVA1AQ9H8M9 152 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 UBTD1Q9HAC8 227 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 SARS2Q9NP81 518 aaKnown RBP0.62□□□□□ -2.31
VPS35-212ENST00000640313 RPS10P5Q9NQ39 176 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 ABHD10Q9NUJ1 306 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 PRR34Q9NV39 138 aa0.62□□□□□ -2.31
VPS35-212ENST00000640313 TYW1Q9NV66 732 aaKnown RBP0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms