RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 XYLT2Q9H1B5 865 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 PRSS16Q9NQE7 514 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 DMAC2Q9NW81 257 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 FLNCQ14315 2725 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 C10orf142B7Z368 130 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 TERTO14746 1132 aaKnown RBP17.07■□□□□ 0.32
CLN3-264ENST00000637985 CYP26A1O43174 497 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 MPOP05164 745 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 CD38P28907 300 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 ATICP31939 592 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 AP3M2P53677 418 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 TRPC3Q13507 836 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 PROX2Q3B8N5 592 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 TTC31Q49AM3 519 aaPredicted RBP17.07■□□□□ 0.32
CLN3-264ENST00000637985 C10orf120Q5SQS8 335 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 ZNF276Q8N554 614 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 CCDC47Q96A33 483 aaKnown RBP17.07■□□□□ 0.32
CLN3-264ENST00000637985 TNIP3Q96KP6 325 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 GZF1Q9H116 711 aaPredicted RBP17.07■□□□□ 0.32
CLN3-264ENST00000637985 ERVMER34-1Q9H9K5 563 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 IGSF5Q9NSI5 407 aa17.07■□□□□ 0.32
CLN3-264ENST00000637985 A0A1W2PQ27 194 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 A0A1W2PQ64 194 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 A0A1W2PQH9 124 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 K7ENP7 123 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 PDXKO00764 312 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 WNT9AO14904 365 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 KIF20AO95235 890 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 RPN1P04843 607 aaKnown RBP17.06■□□□□ 0.32
CLN3-264ENST00000637985 LSSP48449 732 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 NDUFA8P51970 172 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 GALCP54803 685 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 MAP3K7CLP57077 242 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 MYL6P60660 151 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 GABREP78334 506 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 CLDN10P78369 228 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 FNDC3BQ53EP0 1204 aaKnown RBP17.06■□□□□ 0.32
CLN3-264ENST00000637985 CDCP2Q5VXM1 449 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 KIAA1614Q5VZ46 1190 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 INO80CQ6PI98 192 aaPredicted RBP17.06■□□□□ 0.32
CLN3-264ENST00000637985 USP30Q70CQ3 517 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 GPRIN1Q7Z2K8 1008 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 PARD3BQ8TEW8 1205 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 CYB5D2Q8WUJ1 264 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 ZNF516Q92618 1163 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 GOLGA1Q92805 767 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 SYAP1Q96A49 352 aaPredicted RBP17.06■□□□□ 0.32
CLN3-264ENST00000637985 KCTD10Q9H3F6 313 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 SMYD3Q9H7B4 428 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 ASCL3Q9NQ33 180 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 AASDHPPTQ9NRN7 309 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 DACH1Q9UI36 760 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 AGO1Q9UL18 857 aaKnown RBP17.06■□□□□ 0.32
CLN3-264ENST00000637985 PLA2G4CQ9UP65 541 aa17.06■□□□□ 0.32
CLN3-264ENST00000637985 BSNQ9UPA5 3926 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 FAM47DPA6NHR8 397 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 TLR4O00206 839 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 PHACTR2O75167 634 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 CYBBP04839 570 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 CCDC130P13994 396 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 NXPH1P58417 271 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 PDE4CQ08493 712 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 KCNJ12Q14500 433 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 CPXM2Q8N436 756 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 SLC2A14Q8TDB8 520 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 FAM117AQ9C073 453 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 DCLK3Q9C098 648 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 VRTNQ9H8Y1 702 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 NCKAP1Q9Y2A7 1128 aa17.05■□□□□ 0.32
CLN3-264ENST00000637985 HEMK1Q9Y5R4 338 aaPredicted RBP17.05■□□□□ 0.32
CLN3-264ENST00000637985 HHLA1C9JL84 531 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 CALUO43852 315 aaPredicted RBP17.04■□□□□ 0.32
CLN3-264ENST00000637985 RHOBTB3O94955 611 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 HLA-FP30511 346 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 CORO1AP31146 461 aaKnown RBP17.04■□□□□ 0.32
CLN3-264ENST00000637985 COG7P83436 770 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 NFATC3Q12968 1075 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 BECN1Q14457 450 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 ZNF776Q68DI1 518 aaPredicted RBP17.04■□□□□ 0.32
CLN3-264ENST00000637985 NCEH1Q6PIU2 408 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 SCD5Q86SK9 330 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 TADA2BQ86TJ2 420 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 ACOT1Q86TX2 421 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 FAM217AQ8IXS0 508 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 OXR1Q8N573 874 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 PLEKHO2Q8TD55 490 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 DDI1Q8WTU0 396 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 RSPH9Q9H1X1 276 aaPredicted RBP17.04■□□□□ 0.32
CLN3-264ENST00000637985 PABPC3Q9H361 631 aaKnown RBP17.04■□□□□ 0.32
CLN3-264ENST00000637985 POLR1BQ9H9Y6 1135 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 SCML1Q9UN30 329 aa17.04■□□□□ 0.32
CLN3-264ENST00000637985 LRRIQ3A6PVS8 624 aaPredicted RBP17.03■□□□□ 0.32
CLN3-264ENST00000637985 USP12O75317 370 aa17.03■□□□□ 0.32
CLN3-264ENST00000637985 C4BPAP04003 597 aaKnown RBP17.03■□□□□ 0.32
CLN3-264ENST00000637985 NR3C1P04150 777 aa17.03■□□□□ 0.32
CLN3-264ENST00000637985 CASP4P49662 377 aa17.03■□□□□ 0.32
CLN3-264ENST00000637985 PSEN1P49768 467 aa17.03■□□□□ 0.32
CLN3-264ENST00000637985 DPYDQ12882 1025 aa17.03■□□□□ 0.32
CLN3-264ENST00000637985 BIRC3Q13489 604 aa17.03■□□□□ 0.32
CLN3-264ENST00000637985 KRBA2Q6ZNG9 492 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms