RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CD70P32970 193 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 CTSKP43235 329 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 SYKP43405 635 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 DPYDQ12882 1025 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 SMAD1Q15797 465 aaKnown RBP20.2■□□□□ 0.82
CLN3-262ENST00000637699 SGO2Q562F6 1265 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 ZNF776Q68DI1 518 aaPredicted RBP20.2■□□□□ 0.82
CLN3-262ENST00000637699 RFWD3Q6PCD5 774 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 SIX6OS1Q8N1H7 587 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 PDCD7Q8N8D1 485 aaKnown RBP20.2■□□□□ 0.82
CLN3-262ENST00000637699 ENGASEQ8NFI3 743 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 WFDC5Q8TCV5 224 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 ABCC13Q9NSE7 274 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 SUN2Q9UH99 717 aa20.2■□□□□ 0.82
CLN3-262ENST00000637699 MUC22E2RYF6 1773 aaPredicted RBP20.2■□□□□ 0.82
CLN3-262ENST00000637699 GOLGA6L7A0A1B0GV03 622 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 EIF4E1BA6NMX2 242 aaKnown RBP20.19■□□□□ 0.82
CLN3-262ENST00000637699 LATS1O95835 1130 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 LCP1P13796 627 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 CD19P15391 556 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 NDUFA8P51970 172 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 C21orf59P57076 290 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 BST2Q10589 180 aaKnown RBP20.19■□□□□ 0.82
CLN3-262ENST00000637699 ZCWPW2Q504Y3 356 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 PRAMEF14Q5SWL7 426 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 KIAA0895LQ68EN5 471 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 GOLGA1Q92805 767 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 CRELD1Q96HD1 420 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 ORAI3Q9BRQ5 295 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 STIM2Q9P246 746 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 FTSJ1Q9UET6 329 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 NCKAP1Q9Y2A7 1128 aa20.19■□□□□ 0.82
CLN3-262ENST00000637699 STX10O60499 249 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 IGHV4-34P06331 123 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 MCCD1P59942 119 aaPredicted RBP20.18■□□□□ 0.82
CLN3-262ENST00000637699 INAVAQ3KP66 663 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 PIK3R6Q5UE93 754 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 GATAD2AQ86YP4 633 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 HSCBQ8IWL3 235 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 SPATA32Q96LK8 384 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 SLC6A18Q96N87 628 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 ACE2Q9BYF1 805 aaPredicted RBP20.18■□□□□ 0.82
CLN3-262ENST00000637699 RSPH9Q9H1X1 276 aaPredicted RBP20.18■□□□□ 0.82
CLN3-262ENST00000637699 FBXL12Q9NXK8 326 aa20.18■□□□□ 0.82
CLN3-262ENST00000637699 KNTC1P50748 2209 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 PIK3R2O00459 728 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 EPB41P11171 864 aaKnown RBP20.17■□□□□ 0.82
CLN3-262ENST00000637699 RACK1P63244 317 aaKnown RBP20.17■□□□□ 0.82
CLN3-262ENST00000637699 CUL2Q13617 745 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 CBWD6Q4V339 395 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 CBWD3Q5JTY5 395 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 CBWD5Q5RIA9 395 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 TCERG1LQ5VWI1 586 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 SCUBE3Q8IX30 993 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 DCBLD2Q96PD2 775 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 PABPC3Q9H361 631 aaKnown RBP20.17■□□□□ 0.82
CLN3-262ENST00000637699 SERGEFQ9UGK8 458 aa20.17■□□□□ 0.82
CLN3-262ENST00000637699 A0A087WV48 116 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 A0A1B0GTQ1 180 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 CETN3O15182 167 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 VILLO15195 856 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 DFNA5O60443 496 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 SIN3BO75182 1162 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 SLC6A4P31645 630 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 SLC11A2P49281 568 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 RGS7P49802 495 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 GALCP54803 685 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 DAOAP59103 153 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 ST8SIA6P61647 398 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 EDRF1Q3B7T1 1238 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 FAM133BQ5BKY9 247 aaKnown RBP20.16■□□□□ 0.82
CLN3-262ENST00000637699 DCAF17Q5H9S7 520 aaPredicted RBP20.16■□□□□ 0.82
CLN3-262ENST00000637699 MPP7Q5T2T1 576 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 USP30Q70CQ3 517 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 MFN1Q8IWA4 741 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 DHX40Q8IX18 779 aaKnown RBP20.16■□□□□ 0.82
CLN3-262ENST00000637699 SMYD4Q8IYR2 804 aaPredicted RBP20.16■□□□□ 0.82
CLN3-262ENST00000637699 KCTD13Q8WZ19 329 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 MYO19Q96H55 970 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 CNGB3Q9NQW8 809 aa20.16■□□□□ 0.82
CLN3-262ENST00000637699 A0A1W2PPC4 97 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 CBX4O00257 560 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 O00370 1275 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 PLK4O00444 970 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 PAPSS1O43252 624 aaPredicted RBP20.15■□□□□ 0.82
CLN3-262ENST00000637699 ACSL4O60488 711 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 RNASEH1O60930 286 aaKnown RBP20.15■□□□□ 0.82
CLN3-262ENST00000637699 SETSIPP0DME0 302 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 VDRP11473 427 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 CSKP41240 450 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 CLDN6P56747 220 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 LRMPQ12912 555 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 MSANTD2Q6P1R3 559 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 NCEH1Q6PIU2 408 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 KRBA2Q6ZNG9 492 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 TMPRSS12Q86WS5 348 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 UNC45BQ8IWX7 931 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 TTC17Q96AE7 1141 aa20.15■□□□□ 0.82
CLN3-262ENST00000637699 ELF4Q99607 663 aaPredicted RBP20.15■□□□□ 0.82
CLN3-262ENST00000637699 NEUROG2Q9H2A3 272 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms