RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 LSM8O95777 96 aaKnown RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 CDK17Q00537 523 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 ZNF234Q14588 700 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 OR6B2Q6IFH4 312 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 ERMP1Q7Z2K6 904 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 ZNF557Q8N988 423 aaPredicted RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 HJURPQ8NCD3 748 aaPredicted RBP19.95■□□□□ 0.78
CLN3-260ENST00000637578 SORCS1Q8WY21 1168 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 CIPCQ9C0C6 399 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 VPS45Q9NRW7 570 aa19.95■□□□□ 0.78
CLN3-260ENST00000637578 PLXND1Q9Y4D7 1925 aa19.94■□□□□ 0.78
CLN3-260ENST00000637578 APOEP02649 317 aa19.94■□□□□ 0.78
CLN3-260ENST00000637578 C7P10643 843 aa19.94■□□□□ 0.78
CLN3-260ENST00000637578 PABPC1P11940 636 aaKnown RBP19.94■□□□□ 0.78
CLN3-260ENST00000637578 SCNN1AP37088 669 aa19.94■□□□□ 0.78
CLN3-260ENST00000637578 RPS24P62847 133 aaKnown RBP19.94■□□□□ 0.78
CLN3-260ENST00000637578 FUT11Q495W5 492 aa19.94■□□□□ 0.78
CLN3-260ENST00000637578 CHST9Q7L1S5 443 aa19.94■□□□□ 0.78
CLN3-260ENST00000637578 METTL3Q86U44 580 aaKnown RBP19.94■□□□□ 0.78
CLN3-260ENST00000637578 AHI1Q8N157 1196 aa19.94■□□□□ 0.78
CLN3-260ENST00000637578 XPO4Q9C0E2 1151 aaKnown RBP19.94■□□□□ 0.78
CLN3-260ENST00000637578 NOCTQ9UK39 431 aaKnown RBP19.94■□□□□ 0.78
CLN3-260ENST00000637578 RALGAPA1Q6GYQ0 2036 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 A0A1W2PQC6 194 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 ZBTB24O43167 697 aaPredicted RBP19.93■□□□□ 0.78
CLN3-260ENST00000637578 ZNF217O75362 1048 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 DAB1O75553 588 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 GRAP2O75791 330 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 SLC2A3P11169 496 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 POLR2FP61218 127 aaKnown RBP19.93■□□□□ 0.78
CLN3-260ENST00000637578 SF3A2Q15428 464 aaKnown RBP19.93■□□□□ 0.78
CLN3-260ENST00000637578 CCDC6Q16204 474 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 PTPRNQ16849 979 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 TAF3Q5VWG9 929 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 ZNF677Q86XU0 584 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 NETO1Q8TDF5 533 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 NT5C3BQ969T7 300 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 PRMT1Q99873 361 aaKnown RBP19.93■□□□□ 0.78
CLN3-260ENST00000637578 TMEM245Q9H330 911 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 SYNCQ9H7C4 482 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 DNAH14Q0VDD8 3507 aa19.93■□□□□ 0.78
CLN3-260ENST00000637578 MOCS2O96007 188 aaPredicted RBP19.92■□□□□ 0.78
CLN3-260ENST00000637578 MMEP08473 750 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 CD70P32970 193 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 NOS2P35228 1153 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 SOX5P35711 763 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 MATKP42679 507 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 ATXN1P54253 815 aaKnown RBP19.92■□□□□ 0.78
CLN3-260ENST00000637578 CREB5Q02930 508 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 STARD3Q14849 445 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 LPCAT2Q7L5N7 544 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 MFN1Q8IWA4 741 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 ATP6V0D2Q8N8Y2 350 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 NEK11Q8NG66 645 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 TTC17Q96AE7 1141 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 C18orf8Q96DM3 657 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 MKRN2Q9H000 416 aaKnown RBP19.92■□□□□ 0.78
CLN3-260ENST00000637578 PDCL3Q9H2J4 239 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 FAM204AQ9H8W3 233 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 DDIT4Q9NX09 232 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 RRN3Q9NYV6 651 aa19.92■□□□□ 0.78
CLN3-260ENST00000637578 IGHV1OR15-9A0A0B4J2B8 117 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 MAP3K13O43283 966 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 AP5Z1O43299 807 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 GDF9O60383 454 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 DLDP09622 509 aaKnown RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 TACR2P21452 398 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 PRKCHP24723 683 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 CCR1P32246 355 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 PBX1P40424 430 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 OTUD1Q5VV17 481 aaPredicted RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 MBLAC2Q68D91 279 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 ERICH1Q86X53 443 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 XYLT1Q86Y38 959 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 NPY6RQ99463 290 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 RTKNQ9BST9 563 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 ADAM33Q9BZ11 813 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 SLC6A17Q9H1V8 727 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 STIM2Q9P246 746 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 SLC12A6Q9UHW9 1150 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 CDV3Q9UKY7 258 aaKnown RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 PLA2G4CQ9UP65 541 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 CACNA1AO00555 2505 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 TYW5A2RUC4 315 aaKnown RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 SLC30A4O14863 429 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 CBFA2T2O43439 604 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 GFPT2O94808 682 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 CYP1A1P04798 512 aaPredicted RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 CHRNB2P17787 502 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 COPAP53621 1224 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 LIMK1P53667 647 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 NOMO3P69849 1222 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 FOXK2Q01167 660 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 CDR2Q01850 454 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 LMAN2Q12907 356 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 MTA1Q13330 715 aa19.91■□□□□ 0.78
CLN3-260ENST00000637578 CAMK2GQ13555 558 aaPredicted RBP19.91■□□□□ 0.78
CLN3-260ENST00000637578 FSCBQ5H9T9 825 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms