RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CNTNAP2Q9UHC6 1331 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 BCLAF3A2AJT9 711 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 YDJCA8MPS7 323 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 BTBD19C9JJ37 291 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CREB3O43889 395 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 TIMP1P01033 207 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CRHR1P34998 444 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ACADSBP45954 432 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 HK2P52789 917 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PRKAA2P54646 552 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ALDH18A1P54886 795 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 AQP5P55064 265 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 POLE2P56282 527 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 SLC25A11Q02978 314 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 KDSRQ06136 332 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 IFRD2Q12894 506 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CAPSQ13938 189 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PTCRAQ6ISU1 281 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 MTHFD1LQ6UB35 978 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 METTL7BQ6UX53 244 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 RASSF3Q86WH2 238 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ZFAND2BQ8WV99 257 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PRPF31Q8WWY3 499 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PTCD3Q96EY7 689 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ZBTB45Q96K62 511 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 C12orf42Q96LP6 360 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 RNF157Q96PX1 679 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 GMLQ99445 158 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 WDR83Q9BRX9 315 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 SLC13A1Q9BZW2 595 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 MROH8Q9H579 483 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 RETREG1Q9H6L5 497 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 STARD7Q9NQZ5 370 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 NSMCE4AQ9NXX6 385 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 SLC17A7Q9P2U7 560 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ADAM28Q9UKQ2 775 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ITGA11Q9UKX5 1188 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PHF24Q9UPV7 400 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 GBF1Q92538 1859 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CCDC195A0A1B0GUA6 201 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 RBM47A0AV96 593 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 FOXO6A8MYZ6 492 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 HBP1O60381 514 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 KRT36O76013 467 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 MICAL2O94851 1124 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 HSPA4LO95757 839 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 DHRS4L1P0CG22 281 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 GNAT1P11488 350 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 MLNP12872 115 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CCDC130P13994 396 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PRDX6P30041 224 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CCNFP41002 786 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CLCN2P51788 898 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 LAMTOR4Q0VGL1 99 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 BST1Q10588 318 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM132DQ14C87 1099 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 SNX17Q15036 470 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 TAZQ16635 292 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 INSCQ1MX18 579 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PTPN20Q4JDL3 420 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 KCNT1Q5JUK3 1230 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PPP1R15BQ5SWA1 713 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 RARS2Q5T160 578 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ANKRD22Q5VYY1 191 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ANO7Q6IWH7 933 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 C16orf89Q6UX73 402 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 TAS1R3Q7RTX0 852 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 XYLT1Q86Y38 959 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 UNC45BQ8IWX7 931 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 HS6ST3Q8IZP7 471 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CCDC33Q8N5R6 958 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 UBR7Q8N806 425 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ICA1LQ8NDH6 482 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 STKLD1Q8NE28 680 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 RXFP2Q8WXD0 754 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 USP6NLQ92738 828 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 UTP4Q969X6 686 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 MCRS1Q96EZ8 462 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 TTC1Q99614 292 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 GPR20Q99678 358 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 SDCBP2Q9H190 292 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 C1orf21Q9H246 121 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 SMARCAD1Q9H4L7 1026 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ETNK2Q9NVF9 386 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 EPS15L1Q9UBC2 864 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 NKX1-2Q9UD57 310 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 BARX2Q9UMQ3 279 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 MRPS17Q9Y2R5 130 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 USP34Q70CQ2 3546 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 PTPRDP23468 1912 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CEP350Q5VT06 3117 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 SDR42E2A6NKP2 422 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ZBBXA8MT70 800 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 WNT10BO00744 389 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 TXNDC9O14530 226 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 DPYSL4O14531 572 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 CSDE1O75534 798 aaKnown RBP4.09□□□□□ -1.75
SCN1A-214ENST00000637038 FAM155BO75949 473 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 BPGMP07738 259 aa4.09□□□□□ -1.75
SCN1A-214ENST00000637038 ANPEPP15144 967 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms